Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  216 bits (549), Expect = 3e-60
 Identities = 169/639 (26%), Positives = 302/639 (47%), Gaps = 33/639 (5%)

Query: 6   KLLMIFTSIIITISSILTYFQMHGTNEYLD-RTIKDTISETLDSLEDKINLSIESKVDVS 64
           K+L+  T  ++  + ++         E ++ R +   +  TL ++ +K+ + I + ++ +
Sbjct: 11  KILLTVTVAVLLSTVLVGVLSQRSAKEVVEQRMLTSELPNTLQAIRNKVEMDIATLMNAA 70

Query: 65  KSVID---IYENLLEGE----SPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFK 117
           + +     + + L+EG      PL   +  DV     + Q   YAD +T    T D   +
Sbjct: 71  EQLASSKMLKQWLVEGRPAETEPLVIAQLKDVQQQYKLVQA-SYADRQTAAYYTQDGFLR 129

Query: 118 VPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITE-KLMVTTSAPIYNKNDLTGVIFFDIP 176
           + T   P    W+ N K   T  +   + +   E KL +    P    ND  G++     
Sbjct: 130 ILT---PDQDGWFFNYKNSGTERMLNVFTEANGEVKLFINYQQP----ND-RGLVGLAKS 181

Query: 177 LDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGK----NLFGDFDSFPLSVSESK 232
           LDD+  L+KS+   D G +++VD  G +   +     GK    +L+G   +  L      
Sbjct: 182 LDDMVRLLKSFKIEDTGFVYLVDAKGDVKLHSDTSQIGKASLSSLYGGNVTRELLNKGDF 241

Query: 233 TKDKNGVNYDVLIKMSDF---GGWNLVSIIDHDKARSDIITLRNNSIFT----AVILASV 285
              +  ++ + L+  S +     W LV+ +     R+++  L   S +      V++A+ 
Sbjct: 242 GLTQTELDGETLLVASSYIPSMDWYLVAQVP----RAEVFALLEESAYQILVWTVLIAAA 297

Query: 286 FFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQ 345
           F  +  F    + +P+ ++ D + +I  G  DL  R+P   + E +++   FN F+  +Q
Sbjct: 298 FIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQ 357

Query: 346 SIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITS 405
             + EV   S +++    +     +   +    Q  +  M+ +++NEM AT ++IA   +
Sbjct: 358 HSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVHEIAGNAA 417

Query: 406 EASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAIND 465
           +A++     +   + G   V+   +++  L + +++  +VI+ L   T +I  IL  I  
Sbjct: 418 QAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGSILDVIRA 477

Query: 466 IADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLL 525
           ++DQTNLLALNAAIEAARAGE GRGFAVVA+EVR+LA +T  ST  +  +I  LQ  +  
Sbjct: 478 VSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQSEAAR 537

Query: 526 SVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSN 585
           +V  M +S + + E +    ++   L  ISQ +  I D+  QVA A  EQS V E+IN N
Sbjct: 538 AVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVEDINRN 597

Query: 586 SISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
              I +     S     ++Q + S   L    D L++ F
Sbjct: 598 VTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGF 636