Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  190 bits (483), Expect = 1e-52
 Identities = 120/375 (32%), Positives = 206/375 (54%), Gaps = 8/375 (2%)

Query: 260 DHDKARSDIITLRNNSIFTAVILA------SVFFAILL--FTMRLMLKPLHQLTDAMVNI 311
           ++D+A  +++    N+  TA +L+      ++FF +++    +R +  P+  L      +
Sbjct: 172 ENDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEV 231

Query: 312 SSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEV 371
           S+G+    + +      EF ++  SFN    NL  +VSEV  +  +++    E   +   
Sbjct: 232 SAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALH 291

Query: 372 CNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTES 431
            +N++  Q  EL+ LA++M+EM AT   +A+ T++A+   ++ +    +G   V+     
Sbjct: 292 SSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVR 351

Query: 432 VGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGF 491
           +  +   ++ T  VI+ L   ++NI ++L+ I  IA+QTNLLALNAAIEAARAGE GRGF
Sbjct: 352 IDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGF 411

Query: 492 AVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCL 551
           AVVADEVR+LA +TQ+ST +I SII  LQ  +  +   M +S  +  ET+  + ++ + +
Sbjct: 412 AVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESI 471

Query: 552 DNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQK 611
             IS SV  I  +  Q+ATA  EQ  VSEE+N N  +I   ++ +++   +++       
Sbjct: 472 AKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLS 531

Query: 612 ALIGHQDDLISKFII 626
            L     D++ KF I
Sbjct: 532 HLATQLQDMVKKFHI 546