Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  241 bits (616), Expect = 5e-68
 Identities = 171/630 (27%), Positives = 315/630 (50%), Gaps = 29/630 (4%)

Query: 10  IFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKSVID 69
           I  S++I +S ++        +      +++++ E +  L D+    I+  +   + ++ 
Sbjct: 10  ILISVVIALSLVIGLLSWQSYSSQKSLLLQNSL-EQVQRLGDQQAERIQEWLAGRQDIVG 68

Query: 70  IYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSW 129
              + +EG+S       +     S  FQL  Y  +  G+++ +D +    TG+DPRTR W
Sbjct: 69  ALASKVEGDS----LNALQQAQASGRFQLTYYGTQ-AGQMLDSDLSID-RTGYDPRTRPW 122

Query: 130 YLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIKSYNP 189
           Y  A       L++PYVD+    L+VT +  +       GV+  D+ +  + E +     
Sbjct: 123 YKQATNERGLILTKPYVDVAYNVLVVTMAQAVSQ-----GVVGGDLSIASLVESVNRMTL 177

Query: 190 FDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDS-----FPLSVSESKT--------KDK 236
              G   ++   G +I   K+         D D+      P    ++ T        + +
Sbjct: 178 PANGYAIMMHQDGTVI-AYKDTSKAMKPVSDIDNDLNHNLPQQSRQAGTWLPMYFEHESR 236

Query: 237 NGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRL 296
           + + + V I  +D   W LV ++D +   + +  L    +  + ++  +    + + + L
Sbjct: 237 DKLVWGVDIPNTD---WELVIVLDKETLEAPLTNLLLTQLGLSAVVLLLSVLAISWLVNL 293

Query: 297 MLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSE 356
           +L PL +++ A+  I+ G+ DLT RI   T  E   + +SFN FVG+   ++S ++  + 
Sbjct: 294 LLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRHLAG 353

Query: 357 KINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKING 416
           +++     + +   +    +  Q +E+ M+A+++ EM + +N+IA      +    +   
Sbjct: 354 ELDADAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAA 413

Query: 417 QVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALN 476
              +G   V+    S+ +L +++ +   VI+DL+R  Q+I  IL  I  IA+QTNLLALN
Sbjct: 414 SSFQGKELVNKTRSSINSLADEVTQATEVIEDLSRHAQSISSILATIQGIAEQTNLLALN 473

Query: 477 AAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNI 536
           AAIEAARAGE GRGFAVVADEVR L+ +TQ+ST+ + + I  LQ  +  +V +M+ S  +
Sbjct: 474 AAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQML 533

Query: 537 ASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTL 596
           A  ++  +  + + L+ I+Q+V  I D+  Q+ATAA EQ+ V+ EI  N+++IKD  D +
Sbjct: 534 AGNSVEDANAAVKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEI 593

Query: 597 SSLGNKISQQAYSQKALIGHQDDLISKFII 626
           +        QA + KA     +  ++ FI+
Sbjct: 594 TEAAKSDLTQAQALKARANDLNAQVATFIL 623