Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  201 bits (511), Expect = 8e-56
 Identities = 168/641 (26%), Positives = 294/641 (45%), Gaps = 40/641 (6%)

Query: 7   LLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKS 66
           LL +  +++++   +    Q    N    R +   +   +  + +KI+L I S ++ ++ 
Sbjct: 17  LLTVTFAVLLSTILVGVISQRSAKNVVQQRMLGSEMPSLMMQIRNKIDLDISSLMNAAEQ 76

Query: 67  VIDIYENL--LEGESPLSKFKDVDVNHLSNVFQLF-----GYADERTGEIITNDPNFKVP 119
           +      L  LE   P  +   V V  L ++ + +      YAD +T    T D   +  
Sbjct: 77  LASSRMLLQWLENGRPQEQEPQV-VAQLKDITRQYHLAQASYADRQTAAYYTQDGFLREL 135

Query: 120 TGFDPRTRSWYLNAKKLNTFSLSEPYVDLITE-----KLMVTTSAPIYNKNDLTGVIFFD 174
           T   P    W+ + +     S  E  +++ TE     KL +      Y + +  G++   
Sbjct: 136 T---PAQDGWFFSYRD----SGQERMLNVFTEANGEIKLFIN-----YQQPNGRGLVGLA 183

Query: 175 IPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTK 234
             LDD+ +L+ S+   + G +++VD  G++         GK       S     S     
Sbjct: 184 KSLDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAANIGSLLNRS 243

Query: 235 DKNGVNYDVLIKMSDFGG-------WNLVSIIDHDKARSDIITLRNNSIFT----AVILA 283
           D N ++ ++  + +           W LV+ +      +++  L  ++++      +I+A
Sbjct: 244 DFNLIDTEIQGEKTFVASSYIPSMDWYLVAQVPE----AEVFALLRDAVYQILIWTLIIA 299

Query: 284 SVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGN 343
           + F  + +     + +P+ Q+     +I  G  DL  R+P +   E +++   FN F+  
Sbjct: 300 AGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISK 359

Query: 344 LQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQI 403
           +Q  V EV   SE++     +     +       +Q     M+ +++NEM AT N+IA  
Sbjct: 360 IQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASN 419

Query: 404 TSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAI 463
            ++A+      + + N G   V+   +++  L   +++   VI+ L   T++I  IL  I
Sbjct: 420 AAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVI 479

Query: 464 NDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENS 523
             I++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T  ST  +  +I  LQ  +
Sbjct: 480 RAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEA 539

Query: 524 LLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN 583
             +V  M +S   + E +T   ++ Q L  IS+ +  I D+  QVA A  EQS V E+IN
Sbjct: 540 SRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDIN 599

Query: 584 SNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
            N   I D     +S     +Q + +   L    D L++KF
Sbjct: 600 RNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKF 640