Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (489), Expect = 3e-53
 Identities = 125/371 (33%), Positives = 205/371 (55%), Gaps = 18/371 (4%)

Query: 232 KTKDKNGVNYDVLIK-MSDFGG--WNLVSI-IDHDKARSDIITLRNNSIFTAVILASVFF 287
           +T D +G +Y +    M D+ G  + ++ I +D   +   +  +R   I    I   +  
Sbjct: 236 RTIDLDGKSYALYRHGMQDYSGKTFGVLDIALDRSHSEQAMSDIRFKLIMIGFIAFLIGT 295

Query: 288 AILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSI 347
           AI  F  + + +P+ + T+A+ +I+ G  DLT RI   +  E +++  +FN F   + + 
Sbjct: 296 AIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLALAFNRFAEKIHAT 355

Query: 348 VSEVK-------MNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQI 400
           V++V         ++E+++ IT ETQ++ +        Q+ E + +A++MNEM AT  ++
Sbjct: 356 VAQVSDSTSLLATSAEEMSAITNETQQMAK-------RQHLETEQVATAMNEMAATVQEV 408

Query: 401 AQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVIL 460
           A   ++A++  +  +     G   V  V  ++  L +++      I +L R T  ID +L
Sbjct: 409 AHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVL 468

Query: 461 KAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQ 520
             I +IADQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  I  +I  LQ
Sbjct: 469 VVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQ 528

Query: 521 ENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSE 580
            ++  +V  M+ S       +++  ++ + L+ I+Q+V  I  +  Q+A+AA EQ  VS 
Sbjct: 529 HSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVSA 588

Query: 581 EINSNSISIKD 591
           EIN N  +I D
Sbjct: 589 EINKNVNNIND 599



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 347 IVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSE 406
           +  EV+  + +    T+E Q+++E   +S            S+MN   AT+     +  E
Sbjct: 502 VADEVRTLASRTQASTSEIQQMIEALQHSAKST-------VSTMNTSTATTQNCVSLVHE 554

Query: 407 ASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDI 466
           A E    I         AVS++++    +    ++  +V  ++N+   N       INDI
Sbjct: 555 AGEALEAITQ-------AVSTISQMNIQIASAANEQCAVSAEINKNVNN-------INDI 600

Query: 467 ADQTNLLALNAAIEAARAGE 486
                + A  +A++ ARAG+
Sbjct: 601 ----TINATESAVQTARAGD 616



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 344 LQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQI 403
           ++++    K     +N  T  TQ     C + V +    L+ +  +++ +   + QIA  
Sbjct: 524 IEALQHSAKSTVSTMNTSTATTQN----CVSLVHEAGEALEAITQAVSTISQMNIQIASA 579

Query: 404 TSEASEITSKINGQVNEGVGAVSSVTES 431
            +E   ++++IN  VN       + TES
Sbjct: 580 ANEQCAVSAEINKNVNNINDITINATES 607



 Score = 25.4 bits (54), Expect = 0.008
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 316 ADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKI-NCITT--ETQELVEVC 372
           AD    + + T    S+I         + +S VS +  ++    NC++   E  E +E  
Sbjct: 503 ADEVRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAI 562

Query: 373 NNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEIT 411
             +V+   +    +AS+ NE  A S +I +  +  ++IT
Sbjct: 563 TQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIT 601