Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  203 bits (516), Expect = 2e-56
 Identities = 123/326 (37%), Positives = 185/326 (56%), Gaps = 1/326 (0%)

Query: 272 RNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFS 331
           RN  I   +I+A +   I    +R ++ P+ ++T  +  I   S DLT+R   ST  E  
Sbjct: 267 RNIGITVFLIIALILGIITYLIIRSIITPVERITQVISRIEV-SKDLTLRCDASTQDELG 325

Query: 332 KIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMN 391
           +I   FN  VG+ Q ++ +V  +   IN  +    +   + +  VA Q  E DM+A+++ 
Sbjct: 326 EIAQHFNSMVGSFQQLIEQVIESVATINTSSKSVSQNAMLASEGVAQQLNETDMVATAIT 385

Query: 392 EMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNR 451
           EM AT ++IA+ T  A+    K +     G   V      +  L E+++ + SV+ +L R
Sbjct: 386 EMGATIDEIAKTTELAALKAGKTHDNAQLGQSEVEQTILKIRQLSEQINTSASVVDELER 445

Query: 452 QTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKN 511
            ++ I  +L  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA++TQ ST+ 
Sbjct: 446 DSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQSSTQE 505

Query: 512 IGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATA 571
           I +II  LQ  +   V +MD S    +E+   +A + + L  I+  V  I+D++ Q+A A
Sbjct: 506 IANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINNDVRNIMDMSTQIAAA 565

Query: 572 AYEQSHVSEEINSNSISIKDKADTLS 597
             EQS V+ E+N N + I+D A+  S
Sbjct: 566 IEEQSMVAAEVNKNVVVIRDIAEDSS 591