Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  200 bits (509), Expect = 2e-55
 Identities = 177/627 (28%), Positives = 296/627 (47%), Gaps = 48/627 (7%)

Query: 38  IKDTISETLDSLEDKINLSIESKVDVSKSVIDIYENL-LEGESPL-SKFKDVDVNHL--- 92
           I ++ +E L    D++ L+I + +  +  +  +Y      G   L S+F +V+V+H    
Sbjct: 84  IVESTAEELPLKRDRLELAIAAVLKKNTQISSMYAQFEANGYDGLDSEFLNVNVSHSVAS 143

Query: 93  SNVFQLFGYADERTGEII---TNDPNFKVPTG---FDPRTRSWYLNAKKLNTFSLSEPYV 146
           S V +++ Y     G +      D + K  T    F  R   WYL AK+     L EPY+
Sbjct: 144 SGVLEIY-YTRNDDGTVEHHQVEDSSEKYKTSLNEFGIRESEWYLCAKETLKPCLMEPYL 202

Query: 147 DLITE---KLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIK--SYNPFDA-GTIFIVDN 200
             IT     LM + +          GV+  D+ L   Q LI   S + +D    + ++  
Sbjct: 203 YEITPGNTALMTSLTVSAVKHKQFIGVVGVDVNLPVFQVLIDKLSKSLYDGQAKVTLLST 262

Query: 201 SGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNG----------VNYDVLIKMSDF 250
            G ++  +      + L    D  P    +     KNG          V Y + I +++ 
Sbjct: 263 RGLVVAASHYSKKARPLAESID--PKLAVQMIALHKNGGYMANDDEIIVAYPIDIPLAN- 319

Query: 251 GGWNLVSIIDHDKARSDIITLRNN---------SIFTAVILASVFFAILLFTM--RLMLK 299
             W+L   +    A    I L            SI   V LA    A++  ++  R ++ 
Sbjct: 320 AEWSLAIQVPKSMALKSSILLNEKMDDMATSLGSILVIVGLAVSILAVVTISIVIRSVIA 379

Query: 300 PLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKIN 359
           PL  +   + N++S   DLT  I   +  E   +   FN F+  L+ ++SE+K  + +  
Sbjct: 380 PLRLIQGRVENLASADGDLTQSIEVDSHAELIALGKGFNSFIHKLKDLISELKALAGQTQ 439

Query: 360 CITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVN 419
             +  + ++ E+  +SV  QY E++ + +++NEM AT+ ++A+ + + +  T  ++  V+
Sbjct: 440 EESLSSAKIAELTRDSVHRQYGEIESVVTAVNEMSATALEVAKASEQTAAETEAMSRNVH 499

Query: 420 EGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAI 479
               +++   + V  + ++  + K  +  +   + NI  IL+ I+ IA QTNLLALNAAI
Sbjct: 500 LSEESLTKAMDYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAI 559

Query: 480 EAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASE 539
           EAARAGE GRGFAVVADEVR+LA KTQ ST +I  +I  LQ+    +  ++D+    A  
Sbjct: 560 EAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQKEVQSASAIIDKG---AER 616

Query: 540 TMTISADSKQCLDNISQSVIQIVDITNQV---ATAAYEQSHVSEEINSNSISIKDKADTL 596
                + ++Q L +++  V QI +I+ QV   A AA EQS V+EE+N N   I D A  L
Sbjct: 617 AQMAVSQTEQALTSLNSMVSQIEEISAQVTHIAAAAEEQSAVTEEVNRNITGISDSASEL 676

Query: 597 SSLGNKISQQAYSQKALIGHQDDLISK 623
           + L  +  Q +     L+  Q   + K
Sbjct: 677 ARLAGEAQQSSVVLAELVKQQHQQLGK 703