Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  238 bits (606), Expect = 8e-67
 Identities = 175/636 (27%), Positives = 313/636 (49%), Gaps = 20/636 (3%)

Query: 1   MKFSIKLLMIFTS---IIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSI 57
           M+ ++K  ++F+S   + IT++ +++       N  +D T +  I +  ++  + I L +
Sbjct: 1   MRSTLKTRLLFSSLFAVFITVAVLVSISSYVIRNHAIDNT-QGEIDQLANTFAEGIGLWM 59

Query: 58  ESKVDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFK 117
           + +    K+ I   +  +E +  +     +   H +  F L  + DE+ G +   DP   
Sbjct: 60  QDR----KTAITSLKKTVEADPNVQITPYLLQAHNAMGFALTYFGDEQ-GNMYRQDPALN 114

Query: 118 VPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPL 177
               +DPR R WY++AK  N   ++ PYV    +K +VT + P+     L GV   ++ +
Sbjct: 115 T-ANYDPRERPWYMDAKAANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTI 173

Query: 178 DDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLS-------VSE 230
           D + + ++       G   +VD +G II      ++ + L      F  S        + 
Sbjct: 174 DQLTDAVQRLEVPGKGYTLMVDTAGLIISHPNTQLNNQQLTKIDSHFTPSWLSQRANANT 233

Query: 231 SKTKDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAIL 290
            + ++ +G    V +       W L+ +++  +  S   +L        V L  +F  +L
Sbjct: 234 MEERELDGGTQLVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLLVIFGLVL 293

Query: 291 LFTMRLMLKPLHQLTDAMVNISSGSADLTVRI--PNSTDQEFSKIINSFNIFVGNLQSIV 348
           +   ++  K L ++  A+ +I+ G  DLTVRI   NS D E   + + FN FV  L  ++
Sbjct: 294 VAIFKMQFKDLERVALALNDIAEGDGDLTVRIHTANSHD-EIGILASGFNRFVERLHGMI 352

Query: 349 SEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEAS 408
           S +   + ++      +       +  +  Q  E+ M+A+++ EM + + +IA      +
Sbjct: 353 SRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTA 412

Query: 409 EITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIAD 468
           +         N G   V    +S+ NL  ++D    +I +LN  +Q I+ IL  I+ IA+
Sbjct: 413 QTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAE 472

Query: 469 QTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVH 528
           QTNLLALNAAIEAARAGE GRGFAVVADEVR L+ +T  ST+ I ++I  LQ+ +  +V 
Sbjct: 473 QTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVK 532

Query: 529 VMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSIS 588
            M +S ++A  ++  +  + + L  IS+++ +I D+ +Q+ATAA EQ+ V+ EIN N+ S
Sbjct: 533 SMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTES 592

Query: 589 IKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
           I++ ++ LS        Q+     L       +S+F
Sbjct: 593 IREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRF 628