Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  202 bits (515), Expect = 2e-56
 Identities = 155/540 (28%), Positives = 270/540 (50%), Gaps = 51/540 (9%)

Query: 126 TRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDL-TGVIFFDIPLDD---VQ 181
           T S+Y+  +     SL+E  V   T KL+      I    ++ +G++ + + L D   V 
Sbjct: 27  TLSYYVEQE-----SLAEEVVTFRT-KLVGERKQQIKEATEIASGIVNYQLSLKDKGNVN 80

Query: 182 ELIKSYNPFDAGTIFIVDNSGKIIFG---------NKNDISG----KNLFGDFDS----- 223
           + ++      AG  F+ D+ GK IF          NK D++     K + G  D+     
Sbjct: 81  QALRDIRFGSAGYFFMYDSQGKNIFHALMPNLEGQNKIDMTDPRGTKIIVGLLDAAKRGD 140

Query: 224 --FPLSVSESKTKDK-NGVNYDVLIKMSDFGGWNL--------VSIIDHDKARSDIITLR 272
             F     +  T ++   +++ +++  +D   W L        +  +  D  ++    + 
Sbjct: 141 GNFSYYYQKPNTNEQIEKISFVMMVPGTD---WMLGTGAYIDDIEAVVEDYRQTVTEQMA 197

Query: 273 NNSIFT---AVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQE 329
             S+     A++L      +++     M+ P+  + D + +I+ G  DLT R+    + E
Sbjct: 198 EKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDE 257

Query: 330 FSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASS 389
            +++  +FN+FV  LQ I+ +V   + K+        +  +V ++ +     E D + ++
Sbjct: 258 IAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTA 317

Query: 390 MNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDL 449
           + EM +T++++AQ T++ +E T    G V      V +  E +  L+E+++     I+ L
Sbjct: 318 ITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHAAGSIKSL 377

Query: 450 NRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQEST 509
           + Q+Q I+ +L  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA +TQ ST
Sbjct: 378 SEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQAST 437

Query: 510 KNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVA 569
             I  ++  L +    +V  MDES      ++  S    + L +++ +V  I D++ Q+A
Sbjct: 438 LEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAINDMSTQIA 497

Query: 570 TAAYEQSHVSEEINSNSISIKDKADTL---SSLGNKISQQAYSQKALIGHQDDLISKFII 626
           TAA EQS V+EEIN N  +I++  + L   S    ++SQ    +   +G   +L+ +F I
Sbjct: 498 TAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQEGTNLG---NLVGQFKI 554