Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  201 bits (511), Expect = 8e-56
 Identities = 129/370 (34%), Positives = 206/370 (55%), Gaps = 14/370 (3%)

Query: 262 DKARSDI---ITLRNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADL 318
           DKA  ++   IT  N  +  A++L++    I +   + +L+ + ++   +  I+ G ADL
Sbjct: 289 DKAAKEVSQKITFINIILLIAILLSAF---ITVIVTQSLLRTIREVVALLNEIADGEADL 345

Query: 319 TVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVAD 378
           T R+P +   E +++  +FN FV  +Q +V+EVK  + ++   +T+   +       ++ 
Sbjct: 346 TQRLPVNGHDELTQLAKNFNRFVLRIQQLVAEVKDTTVQMVSASTQLNSVTHSATQDMSS 405

Query: 379 QYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEK 438
           Q  E  ++AS++ EM A++ ++A     A++++     Q   G   V+  T S+  L  K
Sbjct: 406 QQNETQLVASAITEMAASAVEVAASADTANKLSEDAKAQALLGRETVTRATHSMRELASK 465

Query: 439 LDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEV 498
           ++ + + I+ L   +  I  +L  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 466 VEASATTIEQLRNDSDKIGAVLDVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 525

Query: 499 RSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSV 558
           RSLA +TQESTK I  II  LQ+ S  +  +M +S    + T+      +  L  I++ V
Sbjct: 526 RSLASRTQESTKQIQQIIQTLQDRSGSAATMMGQSREATNSTVEQVTQVESALSTITEMV 585

Query: 559 IQIVDITNQVATAAYEQSHVSEEINSNSISIKDKAD-TLSSLGNKISQQAYSQKALIG-- 615
           + I    +Q+A AA +QS V EEIN +  S+ D A+ TL+     + Q A S   L+G  
Sbjct: 586 MSITHSVSQMAHAAEQQSTVVEEINMSINSVNDSANRTLTG----VKQAASSANGLLGIG 641

Query: 616 -HQDDLISKF 624
              D L+S+F
Sbjct: 642 QQLDGLVSEF 651