Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  184 bits (467), Expect = 8e-51
 Identities = 122/355 (34%), Positives = 195/355 (54%), Gaps = 10/355 (2%)

Query: 275 SIFTAVILASVFFAIL--LFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSK 332
           ++   +IL ++  ++L  LF  R ++  +HQ+   + +++ G  DLT +   S   E   
Sbjct: 176 ALLLGLILVAIVASLLSALFMSRRLVNIVHQIKRVVEHLADG--DLTQKTQISGQNELCA 233

Query: 333 IINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNE 392
           +    +  + +L+ ++S++   SE ++    +         +++     E D + ++M E
Sbjct: 234 LGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHALQTHAVETDQVVTAMTE 293

Query: 393 MVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQ 452
           M AT++ +A   + A+  T + N Q ++   AV     +V  LV K+D     I ++N  
Sbjct: 294 MSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNEN 353

Query: 453 TQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNI 512
           T++I  IL  I DIADQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  I
Sbjct: 354 TRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTAEI 413

Query: 513 GSIIHILQENSLLSVHVMDE---SFNIASETMTISADSKQCLDNISQSVIQIVDITNQVA 569
             ++  L+  +  +V+ MDE   S   A++T T+  +S   L+ ++  V  I  ++NQ+A
Sbjct: 414 NQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTES---LETLTTYVFDINGLSNQIA 470

Query: 570 TAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
           TAA EQS VSEEIN N  +I++  + L+  G      A S  A       ++S F
Sbjct: 471 TAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLAATKEQLTGVVSHF 525



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 76/406 (18%), Positives = 156/406 (38%), Gaps = 82/406 (20%)

Query: 273 NNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISS--GSADL---TVRIPNSTD 327
           N    T   L SVF +ILL                ++ ISS  G A+L   + R+ N+T 
Sbjct: 4   NAKTSTLTALPSVFASILLI---------------IIGISSYRGFAELNNTSSRLVNNTK 48

Query: 328 --QEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDM 385
             + F+ +  +F  F   L ++V      S +   +    ++L E   + +    R +  
Sbjct: 49  LAETFTNVREAF--FELRLATLVHNSDAISLQQRNVRQLVEQLAEFNTDFMGQDARTIRT 106

Query: 386 LASSMNEMVATSNQIA----------QITSEASEITSKINGQVNEGVGAVSSVTESVGNL 435
           L   + + V    Q            ++TSE   +  K++ ++N+ V  ++     +G  
Sbjct: 107 LLPQIEQYVRLYQQELAFAKQTGTEPELTSERGALGPKVSNEINQLVKLITQRNHELGKQ 166

Query: 436 VE-KLDKTKSVIQDL---------------NRQTQNIDVILKAI------------NDIA 467
            E K++ T++++  L               +R+  NI   +K +              I+
Sbjct: 167 AEDKVNATEALLLGLILVAIVASLLSALFMSRRLVNIVHQIKRVVEHLADGDLTQKTQIS 226

Query: 468 DQTNLLALNAAIEAA------RAGENGRGFAVVADEVRSLAIKTQESTKNI-------GS 514
            Q  L AL A ++           +  +    ++D++  L +++  +T  +         
Sbjct: 227 GQNELCALGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHALQTHAVETDQ 286

Query: 515 IIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYE 574
           ++  + E S  + +V  ++ + A  T   +  + +    + Q+   +V +  +V TAA  
Sbjct: 287 VVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTAA-- 344

Query: 575 QSHVSEEINSNSISIKDKADTLSSLG---NKISQQAYSQKALIGHQ 617
             H   E+N N+  I    D +  +    N ++  A  + A  G Q
Sbjct: 345 --HTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQ 388