Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  198 bits (503), Expect = 7e-55
 Identities = 132/406 (32%), Positives = 220/406 (54%), Gaps = 18/406 (4%)

Query: 232 KTKDKNGVNYDVLIK-MSDFGG--WNLVSI-IDHDKARSDIITLRNNSIFTAVILASVFF 287
           +T D NG ++ +    + D+ G  + ++ I +D   +   +  +R   I   VI   +  
Sbjct: 236 RTIDLNGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGT 295

Query: 288 AILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSI 347
           AI  F  + + +P+ + TDA+ +I+ G  DLT RI   +  E +++  +FN F   + + 
Sbjct: 296 AIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHAT 355

Query: 348 VSEVK-------MNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQI 400
           V++V         ++E+++ IT ETQ++          Q+ E + +A++MNEM AT  ++
Sbjct: 356 VAQVSDSTSLLATSAEEMSAITHETQQMAN-------RQHLETEQVATAMNEMAATVQEV 408

Query: 401 AQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVIL 460
           A   ++A++  +  +    +G   V  V  ++  L +++ +  + I +L R T  ID +L
Sbjct: 409 AHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVL 468

Query: 461 KAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQ 520
             I +IADQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  I  +I  LQ
Sbjct: 469 VVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQ 528

Query: 521 ENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSE 580
           +++  +V  M+ S       +++  ++   L+ I+Q+V  I  +  Q+A+AA EQ  VS 
Sbjct: 529 QSAKATVSSMNTSTATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAANEQCAVSA 588

Query: 581 EINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKFII 626
           EIN N  +I D A   +    + ++       L      L+S+F I
Sbjct: 589 EINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI 634