Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  218 bits (555), Expect = 6e-61
 Identities = 153/512 (29%), Positives = 258/512 (50%), Gaps = 44/512 (8%)

Query: 146 VDLITEKLMVTTSAPIYNKNDLT-GVIFFDIPLDD---VQELIKSYNPFDAGTIFIVDNS 201
           V    EKL+      I     +  G++ + + L +   V + ++      +G  F+ D+ 
Sbjct: 41  VTTFREKLIGERKTQIKEATQIAAGIVQYQLSLKEQGNVNQALRDIRFGSSGYFFLYDSQ 100

Query: 202 GKIIFG---------NKNDIS--------------GKNLFGDFDSFPLSVSESKTKDKNG 238
           GK +F          NK D++               KN  G+F  +    + ++  +K G
Sbjct: 101 GKNLFHAVMPNLEGQNKIDMTDPRGTKIIVGLLNAAKNGDGNFSFYFQKPNTNEQIEKIG 160

Query: 239 VNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNS--------IFTAVILASVFFAIL 290
             Y ++I  +D+       I D D    D  T             +  A++LA++   ++
Sbjct: 161 --YSMMIPGTDWMLGTGAYIDDIDAVVEDYRTTVTEQMIDKSYAILLIALLLAAITAPVI 218

Query: 291 LFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSE 350
           L T + M+ P+  + D + +I+ G  DLT R+    D E +++  SFN+FV  LQ+I+ +
Sbjct: 219 LVTAQRMVTPIKNMADNLNDIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGD 278

Query: 351 VKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEI 410
           V   + K+        +  +V +  +     E D + +++ EM AT++++AQ T++ +E 
Sbjct: 279 VAHATAKVKTAANAIHDQTKVMSRQLISHNNETDQVVTAITEMSATASEVAQNTTQVAEA 338

Query: 411 TSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQT 470
           T    G V      V +  E +  L+ +++   S IQ L+ Q+Q I+ +L  I  IA+QT
Sbjct: 339 THAATGDVANAQRCVDASLEEISALMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQT 398

Query: 471 NLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVM 530
           NLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  I  ++  L +   L+V  M
Sbjct: 399 NLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTM 458

Query: 531 DESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIK 590
           +ES      ++  S    + L +++ +V  I D++ Q+ATAA EQS V+EEIN N  +I+
Sbjct: 459 EESQQSCIRSVDSSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVFAIQ 518

Query: 591 D-------KADTLSSLGNKISQQAYSQKALIG 615
           +        ++  +S+   +SQ+  +   L+G
Sbjct: 519 EIVNELLHSSEEAASVSQTVSQEGLNLGKLVG 550