Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  207 bits (527), Expect = 1e-57
 Identities = 149/519 (28%), Positives = 263/519 (50%), Gaps = 47/519 (9%)

Query: 140 SLSEPYVDLITEKLMVTTSAPIYNKNDLT-GVIFFDIPLDD---VQELIKSYNPFDAGTI 195
           SL+E  V   T KL+      I    ++  G++ + + L D   V + ++      AG  
Sbjct: 36  SLAEEVVTFRT-KLVGERKQQIKEATEIAAGIVQYQLSLKDQGNVNQALRDIRFGSAGYF 94

Query: 196 FIVDNSGKIIFG---------NKNDISG----KNLFGDFDS-------FPLSVSESKTKD 235
           FI D+ GK IF          NK D++     K + G  D+       F     +  T +
Sbjct: 95  FIYDSQGKNIFHALMPNLEGQNKIDMTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNE 154

Query: 236 K-NGVNYDVLIKMSDFGGWNL--------VSIIDHDKARSDIITLRNNS---IFTAVILA 283
           +   ++Y +++  +D   W L        +  +  D  ++    + + S   +  A++L 
Sbjct: 155 QIEKISYVMMVPGTD---WMLGTGAYIDDIEAVVEDYRQTVTEQMADKSFMILLIALVLT 211

Query: 284 SVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGN 343
            +   I++     M+ P+  + D++ +I+ G  DLT R+    + E +++  +FN+FV  
Sbjct: 212 GITAFIIMVAAHRMVVPIKNMADSLNDIAKGEGDLTKRLSVKGEDEIAQLGQAFNLFVDK 271

Query: 344 LQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQI 403
           LQ+I+ +V   + K+        +  +V ++ +     E D + +++ EM +T++++AQ 
Sbjct: 272 LQTIIGDVANATAKVKSAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQN 331

Query: 404 TSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAI 463
           T++ +E T    G V      V +  E +  L+ +++     I+ L+ Q+Q I+ +L  I
Sbjct: 332 TTQVAEATQAATGDVANAQRCVDASLEEIAGLMSQINNAAGSIKSLSEQSQKINSVLSVI 391

Query: 464 NDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENS 523
             IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ ST  I  ++  L +  
Sbjct: 392 GGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTLEINEMLSELHKLV 451

Query: 524 LLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEIN 583
            ++V  MDES      ++  S    + L +++ +V  I D++ Q+ATAA EQS V+EEIN
Sbjct: 452 SVAVKTMDESQQSCVRSVDSSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEIN 511

Query: 584 SNSISIKD-------KADTLSSLGNKISQQAYSQKALIG 615
            N  +I++        ++  + +   +SQ+  +   L+G
Sbjct: 512 RNVYAIQEIVNELLHSSEDAAKVSQTVSQEGINLGKLVG 550