Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  204 bits (518), Expect = 1e-56
 Identities = 175/625 (28%), Positives = 295/625 (47%), Gaps = 48/625 (7%)

Query: 40  DTISETLDSLEDKINLSIESKVDVSKSVIDIYENLL-EGESPL-SKFKDVDVNHL---SN 94
           ++ +E L    D++ L++ + +  +  +  +Y      G   L S+F +V+V+H    S 
Sbjct: 86  ESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQFEPNGYDGLDSEFLNVEVSHSVASSG 145

Query: 95  VFQLFGYADERTGEIITN---DPNFKVPTG---FDPRTRSWYLNAKKLNTFSLSEPYVDL 148
             +++ Y     G +  N   D   K  T    F  R   WYL AK+     L EPY+  
Sbjct: 146 SLEVY-YTRNDDGTVEHNQVDDSAEKYVTTLNEFGIREAEWYLCAKETLKPCLMEPYLYE 204

Query: 149 IT---EKLMVTTSAPIYNKNDLTGVIFFDIPLDDVQELIK--SYNPFDA-GTIFIVDNSG 202
           IT     LM + + P+       GV+  D+ L   Q LI   S + +D    + ++   G
Sbjct: 205 ITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQALIDKLSKSLYDGQAKVTLLSTRG 264

Query: 203 KIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNG----------VNYDVLIKMSDFGG 252
            ++  +      + L    D  P   S+     KNG          V Y + I ++    
Sbjct: 265 LVVAASHYSKKARPLSESID--PKLASQIVALHKNGGYMANDDEIIVAYPIKIPLAK-AE 321

Query: 253 WNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILL-----------FTMRLMLKPL 301
           W+L   +   +A    I L +     A  L S+   + L             +R ++ PL
Sbjct: 322 WSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGLAVSILAVVTISIVIRSIIAPL 381

Query: 302 HQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCI 361
             +   + +++S   DLT  I      E   +   FN F+  L+ ++SE+K  + +    
Sbjct: 382 KMIQGRVEHLASADGDLTQSIVVDAHAELIALGKGFNSFIHKLKDLISELKTLAGRTQEE 441

Query: 362 TTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEG 421
           +  + ++ E+ ++SV  QY E++ + +++NEM AT+ ++A+ + + +  T  ++  V   
Sbjct: 442 SLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEVAKASEQTAAETEAMSRNVRLS 501

Query: 422 VGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEA 481
             +++   E V  + ++  + K  +  +   + NI  IL+ I+ IA QTNLLALNAAIEA
Sbjct: 502 EESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIEA 561

Query: 482 ARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETM 541
           ARAGE GRGFAVVADEVR+LA KTQ ST +I  +I  LQ+    +  ++D+    A    
Sbjct: 562 ARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQQEVNSASGIIDKG---AERAQ 618

Query: 542 TISADSKQCLDNISQSVIQIVDITNQV---ATAAYEQSHVSEEINSNSISIKDKADTLSS 598
              + ++Q L +++  V QI +I++QV   A AA EQS V+EE+N N   I D A  L+ 
Sbjct: 619 MAVSQTEQALTSLNSMVSQIEEISSQVTHIAAAAEEQSAVTEEVNRNITGISDSASELAR 678

Query: 599 LGNKISQQAYSQKALIGHQDDLISK 623
           L  +  Q +     L+  Q   + K
Sbjct: 679 LAGEAQQSSVVLAELVKQQHQQLGK 703