Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  213 bits (543), Expect = 2e-59
 Identities = 158/557 (28%), Positives = 278/557 (49%), Gaps = 45/557 (8%)

Query: 85  KDVDVNHL----SNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSWYLNAKKLNTFS 140
           +D DV  +    +N F+ F       G     DPN+          R W+  A       
Sbjct: 111 RDTDVKSVFFGSANTFEYFDLNGRFDG-----DPNYYT------NKRPWWQEAIDQRGLF 159

Query: 141 LSEPYVDLITEKLMVTTSAPIYNKN-DLTGVIFFDIPLDDV-QELIKSYNPFDAGTIFIV 198
           + +P VD     +  T   P+Y  N +L G+   DI +D + + L+      + G  F++
Sbjct: 160 VGDPAVDANDGSISATVKTPVYGANGELIGIGGMDILIDTIGKTLLAPIKYRNYGQAFLM 219

Query: 199 DNSGKIIF--GNKNDISGKNLFGDFDSFPLSVS------ESKTKDKNG---VNYDVLIKM 247
            + GK+++  G  +     +L    DS     S      +   ++  G   V ++ + + 
Sbjct: 220 TDEGKLVYFPGFSDKFPPGSLANQIDSQFKDTSGFTALRQQMQREAQGFAEVTFNGVPQR 279

Query: 248 SDF---GG------WNLVSIIDHDKARSDIITLRNNSIFTAV---ILASVFFAILLFTMR 295
             F   GG      W+L  ++ H+   + +     N+ F A+   +L  +   ++L   R
Sbjct: 280 VTFVSVGGDYPKQKWHLAFMLPHEVIEAPVTEAFWNACFVALGIMLLVGITVWLMLLPFR 339

Query: 296 LMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNS 355
              + L +L DAM +I+ G +DL+ RI    + E  K+ ++FN F   +Q ++   +  +
Sbjct: 340 ---RQLSKLLDAMEDIAEGDSDLSQRILMEREDELGKLGDAFNRFAEKVQQMLLHTRNLT 396

Query: 356 EKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKIN 415
           +++     + +++ ++  +SV+ Q +++D +A++  +M  TS ++A     A++   K  
Sbjct: 397 QEVGTGVMDARQVCDLAVSSVSSQKQQIDSVATAATQMAQTSQEMAISAQRANDFAEKAQ 456

Query: 416 GQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLAL 475
            Q ++G   VS  TE +  L  ++ +   VI++L   ++ I  +L  I +IADQTNLLAL
Sbjct: 457 TQAHDGTQIVSRATEGMKALSVQVIEAAKVIKELRSSSEQIGEVLSVIRNIADQTNLLAL 516

Query: 476 NAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFN 535
           NAAIEAARAGE GRGFAVVADEVR+LA +TQ+ST NI  II  LQ+++L +  VM+    
Sbjct: 517 NAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTANIQGIIQTLQQSALQAEQVMESGVE 576

Query: 536 IASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKAD- 594
            A     ++   +Q L +I+ +++ I   T ++  A  +Q+ V+EE+  N +S++  +D 
Sbjct: 577 QARVGQDLTTQVEQALSDIASAIVSIQQQTVEITVAIGQQAVVAEEVAQNVVSVRGLSDQ 636

Query: 595 -TLSSLGNKISQQAYSQ 610
             LSS     S Q + Q
Sbjct: 637 SLLSSQDLSQSLQGFEQ 653