Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (513), Expect = 4e-56
 Identities = 139/455 (30%), Positives = 241/455 (52%), Gaps = 25/455 (5%)

Query: 177 LDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDK 236
           L D  E+IKS + F+A        S ++I   KN+        DF+     + E+K+K +
Sbjct: 104 LQDHLEVIKSTSGFEAQFSLWYQASSEVINAVKNN--------DFE-LARQLHENKSKKE 154

Query: 237 NGVNYDVLIKMSDFGGW---NLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFT 293
               +  L  + +  G    N V  +D  +A     T    S+  A ++A V   I  F 
Sbjct: 155 ----FKALRSIYNAAGEAADNRVKELDL-QASEQATTQTQISVTIATLVAIVALVIAYFG 209

Query: 294 MRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQ----SIVS 349
            ++++  +  +TD + +I  G  +LT RIP +   E  ++ N+FN+FV  LQ    +I+S
Sbjct: 210 PKIIVNAIRDITDRINDIVDGDGNLTQRIPITRQDEIGELANAFNLFVAQLQQMVIAIIS 269

Query: 350 EVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASE 409
           + K  S+ +  + T++   + +      +Q + +D + +++NEM A   ++A      + 
Sbjct: 270 QTKDVSQTVENLATKSTTTIGISY----EQEQFVDTIVTAVNEMSAAVREVASNALHTAT 325

Query: 410 ITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQ 469
             +K+N Q  EG   ++     +  L E + +  +VI+ L+  + NI  +L  I  IA+Q
Sbjct: 326 EITKVNDQTIEGKNILTQSVNHIQQLSESVKQAVAVIEKLSVNSANIASVLDVIRSIAEQ 385

Query: 470 TNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHV 529
           TNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T+ ST++I  +I  LQ     +V  
Sbjct: 386 TNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTETSTQDIQRMIEELQRGVNDAVKS 445

Query: 530 MDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISI 589
           ++   ++ + T+T+++ ++  LD I  S  ++ +++ Q ATA  EQ+HV+EEIN N   +
Sbjct: 446 IESGASLTNSTVTLASQTQDALDEILNSTSKVSEMSTQTATATEEQTHVTEEINRNLTEL 505

Query: 590 KDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
            DK    +++  +  Q   + + +  +    +S+F
Sbjct: 506 SDKTRYCNTVIQETQQIVVNTQTICSNLQKEVSRF 540