Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  249 bits (636), Expect = 3e-70
 Identities = 180/636 (28%), Positives = 318/636 (50%), Gaps = 20/636 (3%)

Query: 1   MKFSIKLLMIFTS---IIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSI 57
           M+ ++K  ++F+S   ++IT++ +++       N  L+ T +  I +  ++  + I L +
Sbjct: 1   MRSTLKTRLLFSSLFAVLITVAVLVSISSYFIRNNALENT-QHEIDQLANTFAEGIGLWM 59

Query: 58  ESKVDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFK 117
           + +    K  I   +  +E +  +     +   H    F L  + DE+ G +   DP   
Sbjct: 60  QDR----KMAITSLKKTIEADPSVQITPYLLQAHNGMGFALTYFGDEQ-GNMYRQDPALN 114

Query: 118 VPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPL 177
           V   +DPR R WY++AK  N   ++ PYV    +K +VT + P+     L GV   ++ +
Sbjct: 115 V-ANYDPRIRPWYMDAKAANAIVMTAPYVSATLKKQVVTIAEPVTVSGSLFGVAAANLTI 173

Query: 178 DDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLS-------VSE 230
           D + + ++       G   +VD +G II   K+ ++ + L    +SF  S        + 
Sbjct: 174 DQLTDAVQRLQVPGKGYTIMVDKTGLIISHPKSQLNNEQLNKIDNSFTPSWLSQRANANT 233

Query: 231 SKTKDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAIL 290
            + ++ +G    + +       W LV +++ D+  S   TL          L  +F  +L
Sbjct: 234 LEERELDGETQLIYVAAVPSTDWELVFVMNKDEIMSQATTLAWWMSAVGAGLLVIFGLVL 293

Query: 291 LFTMRLMLKPLHQLTDAMVNISSGSADLTVRI--PNSTDQEFSKIINSFNIFVGNLQSIV 348
           +   ++  K L ++  A+ +I+ G  DLTVRI   NS D E   + + FN FV  L  ++
Sbjct: 294 VAIFKIQFKDLERVALALNDIAEGDGDLTVRIHTANSHD-EIGILASGFNRFVERLHGMI 352

Query: 349 SEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEAS 408
           S +   + ++      +       +  +A Q  E+ M+A+++ EM + + +IA      +
Sbjct: 353 SRMHKIAGQLEYQAQGSSASATDNSQRIAVQQDEVTMVATAVTEMASATEEIASNAEHTA 412

Query: 409 EITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIAD 468
           +      G  N G   V    +S+ NL  +++    +I +LN  +Q I+ IL  I+ IA+
Sbjct: 413 QTAQDAVGLSNHGQKQVMQSQQSIRNLANEVETAGRIISELNEHSQKINSILLTISGIAE 472

Query: 469 QTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVH 528
           QTNLLALNAAIEAARAGE GRGFAVVADEVR L+ +T  ST+ I ++I  LQ+ +  +V 
Sbjct: 473 QTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVK 532

Query: 529 VMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSIS 588
            M +S ++A  ++  +  + + L  IS+++ +I D+ +Q+ATAA EQ+ V+ EIN N+ S
Sbjct: 533 SMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTES 592

Query: 589 IKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
           I++ ++ LS        QA     L       + +F
Sbjct: 593 IREVSENLSIEAQSSMVQAQELAHLAASLQQEVGRF 628