Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  202 bits (513), Expect = 5e-56
 Identities = 164/635 (25%), Positives = 290/635 (45%), Gaps = 28/635 (4%)

Query: 7   LLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKS 66
           LL +  +++++   +    Q    +    R +   +   +  + +KI L I S ++ ++ 
Sbjct: 13  LLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIELDISSLMNAAEQ 72

Query: 67  VIDIYENL--LEGESPLSKFKDVDVNHLSNVFQLF-----GYADERTGEIITNDPNFKVP 119
           +      L  LE   P  +   V V  L ++ + +      YAD +T    T D   +V 
Sbjct: 73  LASSRMLLQWLENGRPQEQEPQV-VAQLKDITRQYHLAQASYADRQTAAYYTQDGFLRVL 131

Query: 120 TGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDD 179
           T   P    W+   +     S  E  +++ TE          Y + +  G++     LDD
Sbjct: 132 T---PAQDGWFFGYRD----SGQERMLNVFTEANGEVKLFINYQQPNGRGLVGLAKSLDD 184

Query: 180 VQELIKSYNPFDAGTIFIVDNSGKIIF----------GNKNDISGKNLFGDFDSFPLSVS 229
           +  L+ S+   + G +++VD  G++              K+  SG N+    +    ++ 
Sbjct: 185 MVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISSLLNRSDFNLI 244

Query: 230 ESKTKDKNGVNYDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAI 289
           +++ + +N       I   D   W LV+ +   +  + +       +   +I+A+ F  +
Sbjct: 245 DTQIQGENTFVASSYIPSMD---WYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIML 301

Query: 290 LLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVS 349
            +     + +P+ Q+     +I  G  DL  R+P   + E +++   FN F+  +Q  V 
Sbjct: 302 AIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVI 361

Query: 350 EVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASE 409
           EV   SE++     +     +       +Q     M+ +++NEM AT N+IA   ++A+ 
Sbjct: 362 EVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAV 421

Query: 410 ITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQ 469
                + + N G   V+   +++  L + +++   VI+ L   T++I  IL  I  I++Q
Sbjct: 422 AAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISEQ 481

Query: 470 TNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHV 529
           TNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T  ST  +  +I  LQ  +  +V+ 
Sbjct: 482 TNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNA 541

Query: 530 MDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISI 589
           M +S   + E +    ++ Q L  IS  +  I D+  QVA A  EQS V E+IN N   I
Sbjct: 542 MAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEI 601

Query: 590 KDKADTLSSLGNKISQQAYSQKALIGHQDDLISKF 624
            +     +S     +Q + +   L    D L++KF
Sbjct: 602 NEITQRTASTAQAAAQASLALNQLAHRLDTLVAKF 636