Pairwise Alignments

Query, 253 a.a., type 4 prepilin-like proteins leader peptide-processing enzyme from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., prepilin peptidase (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (260), Expect = 2e-27
 Identities = 79/277 (28%), Positives = 127/277 (45%), Gaps = 42/277 (15%)

Query: 5   YLILFSIVSLI----LGSFSNVVIYRLPRKILLKNHFF---------------------- 38
           Y +LF+ +S +    +GSF NVVI+RLP  +++K  +                       
Sbjct: 11  YPLLFAAISFVFAAVIGSFLNVVIHRLP--VMMKREWQEECNQYLDEYHKATVTEIKDKL 68

Query: 39  ----------YDIDSNRSMCPKCGNKISWYDNVPLLSYLLLHGKCRHCDEKISLSYFIVE 88
                     Y++    S CPKC   I  + N+P++ +L+L GKC HC   IS+ Y I+E
Sbjct: 69  AQPIDDFPEKYNLIVPGSSCPKCKTDIKPWHNLPVIGWLMLGGKCAHCKTSISVRYPIIE 128

Query: 89  -LSFFIIAFPIYWLSTDWVDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIFMLAFIYV 147
            L+ F +A+  Y     W   F  L L F L  L  ID   MLLP+ +T P+  L  +  
Sbjct: 129 ALTGFAVAYLAYHFGPTWQFVFATL-LTFGLIALTGIDLDEMLLPDQITLPLLWLGLLIN 187

Query: 148 QQNPALTVESSIIGGFAAFIISYVSNFIVRLFKRIDVMGGGDIKLYTAIGTLIGVEFVPY 207
                +++  ++IG  A ++  +   +  ++    + MG GD KL    G   G + +P 
Sbjct: 188 LNGTYVSITDAVIGASAGYMSLWSVFWGFKILTGKEGMGYGDFKLLAVFGAWFGWQLLPL 247

Query: 208 LFLLSSIIAFIHWFFARVSCRYCL--YIPLGPSIIIS 242
           + LLSSI+  +      V+ +      IP GP I ++
Sbjct: 248 IILLSSIVGALVGLLLIVNKKINSGNPIPFGPYIALA 284