Pairwise Alignments

Query, 340 a.a., toxin coregulated pilus biosynthesis protein E from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., type II secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score = 66.6 bits (161), Expect = 9e-16
 Identities = 63/339 (18%), Positives = 142/339 (41%), Gaps = 10/339 (2%)

Query: 9   RLELYSMLVDLLNDNIPL---YDALNKIQNEGVGIYDKNFIKSIELIKDRMKSNSSLTDA 65
           R+ LY  +  LL + +PL    D +  I ++G          +   I   +    +L  A
Sbjct: 26  RIRLYESMTALLENGVPLDLAIDRIGSIYSDGGRRARHPIALASYGIGKAVDGGKTLAQA 85

Query: 66  LTGLIPDKEVLMINVAENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVV 125
               +P +E  +I+  E SG +    +   + I    ++    +S+   P  +  +   +
Sbjct: 86  CLNWVPYQEHAVISAGEKSGNLIQAFSDCVRIIEARQKVMKLVVSTASYPVFVWSLMAYL 145

Query: 126 IAGYSVKVFPTFESVLPVSRWPGVTQALYNLGFSLYEGLWIKVLIFVAIFITILVFMSKN 185
           +   + +V P          W G    L+ +   +     + + + V + +T +V +   
Sbjct: 146 LNVIATRVVPAMSRSSNPEAWSGAPMVLHMIATFVTNWGLLTLCLVVVLVVTSVVTLPY- 204

Query: 186 ITGNFRDGFLDKLPPFNFVKHIAATEFLANMSMLLDSRVPFKEGLDIVDHKTTRWLSSHL 245
             G +R   L+ LPP++  K +  + FL N++++L + +     LD +      WL   L
Sbjct: 205 FRGPWRTR-LEILPPWSIYKALHGSTFLLNIAVMLRANIDPLGALDTLKRGANPWLRERL 263

Query: 246 QRMKANMQEGLDYKQALDTN---LLDKKMLLTMAVYSELPNFSDVMQKLAIE-ANINLHK 301
           +     ++ G ++ +ALD +     D + +  + V S   +FS  + + ++    I+L K
Sbjct: 264 EAAHYGVRMGKNFGEALDLSGHEFPDHEAIQFLIVLSTTQSFSAAVHRYSLRWLEISL-K 322

Query: 302 KIATLAGVMKNISLITLALSVIWIFGAIFSLVDKLSSSL 340
           ++   A  +  +S++ + L +I +    +S+    +  +
Sbjct: 323 QVERYAKTLSLVSMVLIGLLMILVMVGAYSMTGNATQGM 361