Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., Type IV fimbrial assembly, ATPase PilB from Pseudomonas fluorescens FW300-N2E2

 Score =  136 bits (343), Expect = 2e-36
 Identities = 114/369 (30%), Positives = 177/369 (47%), Gaps = 34/369 (9%)

Query: 79  QAKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSEADAL 138
           Q  D + + + + K+   A   G+SD+HF   ++I +++ R +G +   RE+        
Sbjct: 177 QDTDDTPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGIL---REVARPPIQLA 233

Query: 139 MFVLYNVMATTKETTWNRKLPQDANIILVINE-KAYRFRYAHMP-LFGEGGKNYHAVVRI 196
             +   +          R+ PQD  + + +++ K+  FR   +P L+GE       V+RI
Sbjct: 234 NRIAARLKVMASLDISERRKPQDGRLKMRLSKTKSIDFRVNTLPTLWGE-----KVVIRI 288

Query: 197 IYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFFN 256
           + PS+  +      +GY     D     L    GL +V+G TGSGK+ SL  Y  L   N
Sbjct: 289 LDPSSAQM--GIDALGYEPDQKDLYMAALKQPQGLILVTGPTGSGKTVSL--YTGLNILN 344

Query: 257 KYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEIR 316
                    T EDPVE  + G  Q ++    + +    FA A+RS +R+DPDVIM+GEIR
Sbjct: 345 TVDIN--ISTAEDPVEINMEGINQVNV----NPRQGLDFAQALRSFLRQDPDVIMVGEIR 398

Query: 317 DKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLIP 376
           D  T E    A ++GH  L+T+H  S    L RL  +G+    IA+   L  I +Q+L  
Sbjct: 399 DLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHL--IIAQRLAR 456

Query: 377 ELCPSCK--VSFVDE--------RYQRAVFSANEN-GCEACNHSGFKGRLLLLETLVPTV 425
           +LC  CK  +   +E        R     F+  E  GCE CN +G+KGR+ + E +  T 
Sbjct: 457 KLCSHCKKAIDIPEETLLKEGFPREHLGTFTIYEPVGCEQCN-NGYKGRVGVYEVVKNTP 515

Query: 426 EDLELVASE 434
           E   L+ +E
Sbjct: 516 ELQRLIMAE 524