Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., general secretion pathway protein E (RefSeq) from Shewanella amazonensis SB2B

 Score =  153 bits (386), Expect = 2e-41
 Identities = 111/385 (28%), Positives = 186/385 (48%), Gaps = 36/385 (9%)

Query: 61  LVSDANHKLLIANLVTE-QQAKDLSFIEKD------IMKIASSATAYGASDIHFIREDRI 113
           L+ D  +++ +  L  E  Q +DL   + D      I  + S A    ASDIH    ++ 
Sbjct: 109 LMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIRLINALLSEAIKEEASDIHIETYEKQ 168

Query: 114 CKIKFRVNGTMIDYREILSSEADALMFVLYNVMATTKETTWNRKLPQDANIILVINEKAY 173
             ++FRV+G +   +E+L         ++  +    +     +++PQD  I L I  +A 
Sbjct: 169 LVVRFRVDGVL---KEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIGGRAV 225

Query: 174 RFRYAHMPLFGEGGKNYHAVVRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFI 233
             R + MP           V+R++    N    +   +G  E   +    ++   +G+ +
Sbjct: 226 DVRVSTMP----SSHGERVVLRLL--DKNAGNLDLAQLGMTETIREQFDELIRKPHGILL 279

Query: 234 VSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKN 293
           V+G TGSGKST+L  Y  L   N        +TVEDP+EY + G  Q+ +    + K   
Sbjct: 280 VTGPTGSGKSTTL--YAGLTEINSRDTN--ILTVEDPIEYELEGIGQTQV----NTKVDM 331

Query: 294 PFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGL 353
            FA  +R+ +R+DPDV+MIGEIRD  T +    A  +GH  ++T+H  +    + RL  +
Sbjct: 332 TFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDM 391

Query: 354 GMKADKIASPGFLAGITSQKLIPELCPSCKVSFVDERYQRAVFSA--------NENGCEA 405
           G++   ++S   L G+ +Q+L+  LCPSCK   V +  +R +              GC+A
Sbjct: 392 GVEPFLVSSS--LLGVLAQRLVRTLCPSCKAPHVPDERERELLGIGGGDAVIYRATGCKA 449

Query: 406 CNHSGFKGRLLLLETLV--PTVEDL 428
           C H+G++GR  + E L+   TV +L
Sbjct: 450 CGHNGYRGRTGIHELLLVDDTVREL 474