Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., general secretory pathway protein E (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (380), Expect = 8e-41
 Identities = 109/378 (28%), Positives = 184/378 (48%), Gaps = 35/378 (9%)

Query: 61  LVSDANHKLLIANLVTE-QQAKDL------SFIEKDIMKIASSATAYGASDIHFIREDRI 113
           L+ D  +++ +  L  E  Q +DL      + I K I  + S A    ASDIH    ++ 
Sbjct: 111 LMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDIHIETYEKQ 170

Query: 114 CKIKFRVNGTMIDYREILSSEADALMFVLYNVMATTKETTWNRKLPQDANIILVINEKAY 173
             ++FRV+G +   +E+L         ++  +    +     +++PQD  I L I  +A 
Sbjct: 171 LVVRFRVDGVL---KEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAV 227

Query: 174 RFRYAHMPLFGEGGKNYHAVVRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFI 233
             R + MP           V+R++    N    + + +G  +        ++   +G+ +
Sbjct: 228 DVRVSTMP----SSHGERVVLRLL--DKNAGNLDLKQLGMTDEIRHQFDELIRKPHGIIL 281

Query: 234 VSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKN 293
           V+G TGSGKST+L  Y  L   N        +TVEDP+EY + G  Q+ +    + K   
Sbjct: 282 VTGPTGSGKSTTL--YAGLTEINAIDTN--ILTVEDPIEYELPGIGQTQV----NTKVDM 333

Query: 294 PFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGL 353
            FA  +R+ +R+DPDV+MIGEIRD  T +    A  +GH  ++T+H  +    + RL  +
Sbjct: 334 TFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDM 393

Query: 354 GMKADKIASPGFLAGITSQKLIPELCPSCKVSFVDERYQRAVFSANEN---------GCE 404
           G++   ++S   L G+ +Q+LI  LCPSCK     +  +R +   +E+         GC 
Sbjct: 394 GVEPFLVSSS--LLGVLAQRLIRTLCPSCKTEHTPDLRERELLGISEDDPRTIYRATGCS 451

Query: 405 ACNHSGFKGRLLLLETLV 422
           AC H+G++GR  + E L+
Sbjct: 452 ACGHNGYRGRTGIHELLL 469