Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella loihica PV-4

 Score =  135 bits (339), Expect = 5e-36
 Identities = 114/364 (31%), Positives = 175/364 (48%), Gaps = 43/364 (11%)

Query: 77  EQQ--AKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREI---L 131
           EQQ  A D + I   I KI + A   GASD+HF   ++  +I+FR++G + +  E    L
Sbjct: 175 EQQGDASDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPVNL 234

Query: 132 SSEADALMFVLYNVMATTKETTWNRKLPQDANIILVINE-KAYRFRYAHMP-LFGEGGKN 189
           S    A + V+      +K     R++PQD  I + ++  K+  FR + +P ++GE    
Sbjct: 235 SGRISARLKVM------SKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTIWGE---- 284

Query: 190 YHAVVRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKY 249
              V+RI+  S+  +    + +GY          +L    G+ +V+G TGSGK+ SL   
Sbjct: 285 -KIVMRILDSSSAQL--GIEKLGYENDQRKLYEEMLAKPQGMILVTGPTGSGKTVSLYTG 341

Query: 250 IELLFFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDV 309
           + +L   +        T EDPVE  + G  Q  I    + K    FA A+RS +R+DPDV
Sbjct: 342 LNILNTEERN----ISTAEDPVEINLEGVNQVHI----NLKAGLTFASALRSFLRQDPDV 393

Query: 310 IMIGEIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGI 369
           +M+GEIRD  T E    A ++GH  L+T+H  S    L RL  +G+    IAS   L  I
Sbjct: 394 VMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNL--I 451

Query: 370 TSQKLIPELCPSC------------KVSFVDERYQRAVFSANENGCEACNHSGFKGRLLL 417
            +Q+L   LC  C            K+ F   +           GC+ C+  G+KGR+ +
Sbjct: 452 IAQRLARRLCTECRQPEEVPEHELLKLGFTQAQIDEGFTVYKPVGCDLCS-GGYKGRVGI 510

Query: 418 LETL 421
            E +
Sbjct: 511 YEVM 514