Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., type II secretion system protein E (RefSeq) from Shewanella loihica PV-4

 Score =  127 bits (320), Expect = 8e-34
 Identities = 106/374 (28%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 75  VTEQQAKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSE 134
           +T+  + + + + K +  I   A    ASDIH    D++ +I+ R++G + +      + 
Sbjct: 172 LTDADSDNETTVVKLLQSIFEDAVQMRASDIHIEPGDKVLRIRQRIDGQLQENTLQEVNI 231

Query: 135 ADALMFVLYNVMATTKETTWNRKLPQDANIILVINEKAYRFRYAHMPLF-GEGGKNYHAV 193
           A AL+  L  +MA    +   ++LPQD    + I       R + MP++ GE       V
Sbjct: 232 ASALVLRL-KLMAGLDIS--EKRLPQDGRFHMEIKGHKIDVRMSTMPIYHGES-----VV 283

Query: 194 VRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELL 253
           +R++  S   +  +  + G        + R +   +G+ +V+G TGSGK+T+L  Y  L 
Sbjct: 284 MRLLDQSAGLLTLD--ETGMPAEMLARVRRQIKRPHGMLLVTGPTGSGKTTTL--YGVLS 339

Query: 254 FFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIG 313
             N    K   +TVEDPVEY +    Q  +    + K    F++ +R+ +R+DPD+IM+G
Sbjct: 340 ELNTADRK--IITVEDPVEYQLPRINQVQV----NHKIGLDFSNVLRTTLRQDPDIIMVG 393

Query: 314 EIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQK 373
           E+RD+ TVE       +GH+ L+T+H    V+   RL  +G  +  +AS   L  I +Q+
Sbjct: 394 EMRDQETVEIGLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASA--LRVIIAQR 451

Query: 374 LIPELCPSC----KVSFVDERYQRAV----FSANE----NGCEACNHSGFKGRLLLLETL 421
           L+  +C  C      S  D  +  ++    FS  +     GC++CN SG++GR+ + E L
Sbjct: 452 LVRRVCHKCAQPYDASAADHAWLSSISGRDFSQAKFRIGTGCQSCNGSGYRGRIGVFEIL 511

Query: 422 VPTVEDLELVASEN 435
               + ++ + S N
Sbjct: 512 ELDEKMIDAMRSGN 525