Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV pilus biogenesis protein PilB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (357), Expect = 4e-38
 Identities = 118/363 (32%), Positives = 177/363 (48%), Gaps = 35/363 (9%)

Query: 73  NLVTEQQAKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILS 132
           N  T  ++ D + I   I KI + A   GASD+HF   ++  +I+FR++G + +  E   
Sbjct: 173 NEETTGESSDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPI 232

Query: 133 SEADALMFVLYNVMATTKETTWNRKLPQDANIILVINE-KAYRFRYAHMP-LFGEGGKNY 190
           S A  L   L      +K     R++PQD  I + ++  K+  FR + +P L+GE     
Sbjct: 233 SLAGRLSARL---KVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGE----- 284

Query: 191 HAVVRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYI 250
             V+RI+  S+  +    + +GY          +L    G+ +V+G TGSGK+ SL  Y 
Sbjct: 285 KIVMRILDSSSAQL--GIEKLGYEPDQEKLYLEMLAKPQGMILVTGPTGSGKTVSL--YT 340

Query: 251 ELLFFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVI 310
            L   N  +      T EDPVE  + G  Q  I    + K    FA A+RS +R+DPDV+
Sbjct: 341 GLNILNTAERN--ISTAEDPVEINLEGVNQVHI----NLKAGLTFASALRSFLRQDPDVV 394

Query: 311 MIGEIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGIT 370
           M+GEIRD  T E    A ++GH  L+T+H  S    L RL  +G+    IAS   L  I 
Sbjct: 395 MVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNL--II 452

Query: 371 SQKLIPELCPSCK------------VSFVDERYQRAVFSANENGCEACNHSGFKGRLLLL 418
           +Q+L   LCP CK            + F D +  +   +    GCE C+  G+KGR+ + 
Sbjct: 453 AQRLARRLCPECKQPEQIPDHELQRLGFSDVQIAQGFTTYKPVGCEHCS-GGYKGRVGIY 511

Query: 419 ETL 421
           E +
Sbjct: 512 EVM 514