Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., general secretion pathway protein E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  147 bits (372), Expect = 7e-40
 Identities = 109/387 (28%), Positives = 185/387 (47%), Gaps = 35/387 (9%)

Query: 61  LVSDANHKLLIANLVTE-QQAKDL------SFIEKDIMKIASSATAYGASDIHFIREDRI 113
           L+ D  +++ +  L  E  Q +DL      + I K I  + S A    ASDIH    ++ 
Sbjct: 109 LMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDIHIETYEKQ 168

Query: 114 CKIKFRVNGTMIDYREILSSEADALMFVLYNVMATTKETTWNRKLPQDANIILVINEKAY 173
             ++FR++G +   +E+L         ++  +    +     +++PQD  I L I  +A 
Sbjct: 169 LVVRFRIDGVL---KEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAV 225

Query: 174 RFRYAHMPLFGEGGKNYHAVVRIIYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFI 233
             R + MP           V+R++    N    + + +G  ++       ++   +G+ +
Sbjct: 226 DVRVSTMP----SSHGERVVLRLL--DKNAGNLDLKQLGMTDSIRAKFDELIRRPHGIIL 279

Query: 234 VSGTTGSGKSTSLKKYIELLFFNKYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKN 293
           V+G TGSGKST+L  Y  L   N        +TVEDP+EY + G  Q+ +    + K   
Sbjct: 280 VTGPTGSGKSTTL--YAGLTEINSKDTN--ILTVEDPIEYELEGIGQTQV----NTKADM 331

Query: 294 PFADAVRSAMRRDPDVIMIGEIRDKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGL 353
            FA  +R+ +R+DPDV+MIGEIRD  T +    A  +GH  ++T+H  +    + RL  +
Sbjct: 332 TFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDM 391

Query: 354 GMKADKIASPGFLAGITSQKLIPELCPSCKVSFVDERYQRAVFSA---------NENGCE 404
           G++   ++S   L G+ +Q+LI  LCP CK     +  +R +              NGC+
Sbjct: 392 GVEPFLVSSS--LLGVLAQRLIRTLCPKCKTEHTPDERERELLGITADDPRHIYRANGCK 449

Query: 405 ACNHSGFKGRLLLLETLVPTVEDLELV 431
           AC  SG++GR  + E L+      EL+
Sbjct: 450 ACGGSGYRGRTGIHELLLVDDNVRELI 476