Pairwise Alignments

Query, 503 a.a., toxin coregulated pilus biosynthesis protein T from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella sp. ANA-3

 Score =  142 bits (358), Expect = 3e-38
 Identities = 117/357 (32%), Positives = 175/357 (49%), Gaps = 35/357 (9%)

Query: 79  QAKDLSFIEKDIMKIASSATAYGASDIHFIREDRICKIKFRVNGTMIDYREILSSEADAL 138
           +A D + I   I KI + A   GASD+HF   ++  +I+FR++G + +  E   S A  L
Sbjct: 179 EASDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRL 238

Query: 139 MFVLYNVMATTKETTWNRKLPQDANIILVINE-KAYRFRYAHMP-LFGEGGKNYHAVVRI 196
              L      +K     R++PQD  I + ++  K+  FR + +P L+GE       V+RI
Sbjct: 239 SARL---KVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGE-----KIVMRI 290

Query: 197 IYPSNNFVCTNYQDIGYNEADTDAIARILNTSYGLFIVSGTTGSGKSTSLKKYIELLFFN 256
           +  S+  +    + +GY          +L    G+ +V+G TGSGK+ SL  Y  L   N
Sbjct: 291 LDSSSAQL--GIEKLGYEPDQEKLYLEMLAKPQGMILVTGPTGSGKTVSL--YTGLNILN 346

Query: 257 KYKGKGCFVTVEDPVEYLISGAQQSSIVADNDDKTKNPFADAVRSAMRRDPDVIMIGEIR 316
             +      T EDPVE  + G  Q  I    + K    FA A+RS +R+DPDV+M+GEIR
Sbjct: 347 TAERN--ISTAEDPVEINLEGVNQVHI----NLKAGLTFASALRSFLRQDPDVVMVGEIR 400

Query: 317 DKPTVEALSSAVESGHYCLTTIHAGSVVSVLQRLSGLGMKADKIASPGFLAGITSQKLIP 376
           D  T E    A ++GH  L+T+H  S    L RL  +G+    IAS   L  I +Q+L  
Sbjct: 401 DLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNL--IIAQRLAR 458

Query: 377 ELCPSCK------------VSFVDERYQRAVFSANENGCEACNHSGFKGRLLLLETL 421
            LC  CK            + F DE+  +   +    GCE C+  G+KGR+ + E +
Sbjct: 459 RLCTECKQAEQIPEHELQRLGFTDEQIAQGFTTFKPVGCEHCS-GGYKGRVGIYEVM 514