Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  154 bits (389), Expect = 1e-41
 Identities = 162/634 (25%), Positives = 270/634 (42%), Gaps = 39/634 (6%)

Query: 8   VFLLLACIITLAFTAFF-YHSKLSDQTKSISSLSSQQAQERLQS--YQDSLDFYKKLNTS 64
           + L  A ++ +AF  F  ++     Q+ + S+ +S Q    L S   Q  +D   +L  S
Sbjct: 7   ILLAAALVVAVAFACFILFNDYRQRQSLNASTETSMQELGSLTSRNIQTWVDGRIQLLQS 66

Query: 65  LSVAIA--NSLRDKAVEELNAIALRIQENHGFIGVTFASLDGTMFT-DIGTLDWNAKTLR 121
           L+  IA   S  D     +   A        + G T    DG MF+   G    +     
Sbjct: 67  LAQQIAADGSSADSLKRAVGLPAYTSNFQLSYFGGT----DGVMFSVPAGNRAADYDPRA 122

Query: 122 RDWFVKTVELGTKHYTAFDIDKTTGQHVLTIATPVYVGNDIVGSVALDIAGDQIASPNGS 181
           R W+           T   I  ++G+ V+T+ATPV   N ++G    DI    +++   S
Sbjct: 123 RGWYKAANSAQQTIVTEPYIAASSGKLVITVATPVQHQNQMIGVAGADIDLSSVSAIINS 182

Query: 182 GMFMMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNLVSGQYVTFSDADSHWFAVSQTEI 241
             F      F V A       LI  D    K + K L        + A      V + ++
Sbjct: 183 LNFGGHGHAFIVSADG---KILIHPD---SKRVLKTLAEAYP---NGAPQISPGVKEVDL 233

Query: 242 DGENKLFTIIDIQQI-----VQTYKRDIQLIIAGFSGFSC----VMLIGLYWVLSKELSG 292
           DG+ +  +   +  +           D    +A  S F       M+I + ++++     
Sbjct: 234 DGKTQFISFTHVNGVPGADWYVALVLDKDTALAMLSEFRTSALIAMVIAVVFIIALLGML 293

Query: 293 VRQIREWILALS---------DGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHR 343
           +R + + +L +          +G +  R  I  H+E   +  S      R+   +R    
Sbjct: 294 IRVLMQPLLTMGRAMHDIAEGEGDLTRRLVIHGHDEFGALGTSFNRFVERIHTSIREVAS 353

Query: 344 TMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAET 403
               ++     +  +   +  NS Q+      VA A  QL   + ++ Q A  A  ++  
Sbjct: 354 ATGQVNEVALRVVSASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIAQNAALASQHSSD 413

Query: 404 AQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLL 463
           A+ L  +   ++D +    + ++  I +S   I  L   + NI  + +VI +IS QTNLL
Sbjct: 414 ARSLAEDGQQVVDKTIAAMQQLSAKISDSCGNIETLNSNTVNIGQILEVITSISQQTNLL 473

Query: 464 ALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRN 523
           ALNAAIEAARAGE GRGFAVVADEVR+LA +TQ S   +Q +I +LQ  ++ A   MT +
Sbjct: 474 ALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQKMIEELQVGAREAVLTMTDS 533

Query: 524 VSLIHET-QVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYL 582
                 +  +AN+A       ++ ++ EI  +N  V+TA  EQ  V E +   + +I  L
Sbjct: 534 QRQSESSVGIANQA-GERLGSVTQRIGEIDGMNQSVATATEEQTAVVESINVDITEINTL 592

Query: 583 VQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
            QE +  ++ T +A  ++      L   +  F+I
Sbjct: 593 NQEGVENLQATLRACADLEQQAARLKQLVGSFRI 626