Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2E3

 Score =  162 bits (410), Expect = 4e-44
 Identities = 159/635 (25%), Positives = 273/635 (42%), Gaps = 41/635 (6%)

Query: 8   VFLLLACIITLAFTAFF-YHSKLSDQTKSISSLSSQQAQERLQSYQDSLDFYKKLNTSLS 66
           + L  A ++ +AF  F  ++     QT   S+ SS Q    L +         ++    S
Sbjct: 7   ILLAAALVVAVAFACFILFNDYRQRQTLRNSTESSMQELGSLTTSNIQTWLESRIQLLQS 66

Query: 67  VAIANSLRDKAVEELNAIALRIQENHGFIGVTFASLDGTMFT-DIGTLDWNAKTLRRDWF 125
           +A   ++   A++ L  +         F    F   DG MF+   G    +     R W+
Sbjct: 67  LAQQVAVDGPALDNLKRVVGLPAYTSNFQLSYFGGADGVMFSVPAGNRAADYDPRARGWY 126

Query: 126 VKTVELGTKHYTAFDIDKTTGQHVLTIATPVYVGNDIVGSVALDIAGDQIASPNGSGMFM 185
                      T   I  ++G+ V+T+ATPV   N ++G    DI    I++   S  F 
Sbjct: 127 KAANSAQQTIVTEPYIAASSGKLVITVATPVQHQNQMIGVAGADIDLSSISTIINSLNFG 186

Query: 186 MTDRNFNVFASD--LTH--STLIGKDLTKEKPLFKNLVSGQYVTFSDADSHWFAVSQTEI 241
                F V +    L H  S L+ K LT+  P     VS               + + E+
Sbjct: 187 GHGHAFIVSSEGKILIHPDSKLVLKSLTEAYPAGAPKVSP-------------GMKEVEV 233

Query: 242 DGENKLFTIIDIQQIVQTYKRDIQLIIAGFSGFSCV----------MLIGLYWVLSKELS 291
           DG+ +  +   +   V +    + L++   + FS +          M+I +  +++    
Sbjct: 234 DGKTQFISFTHVNG-VPSADWYVALVLDQDTAFSMLSEFRTSAIIAMVIAVVIIITLLSM 292

Query: 292 GVRQIREWILALS---------DGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSH 342
            +R + + +L +          +G + +R  I   +E   +  S      R+   +R   
Sbjct: 293 LIRVLMQPLLTMGRAMHDIAEGEGDLTKRLTIHGQDEFGALGTSFNRFVERIHTSIREVS 352

Query: 343 RTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAE 402
                ++     +  +   +  NS Q+      VA A  QL   + ++ Q A  A  ++ 
Sbjct: 353 SATGQVNEVALRVVSASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIAQNAALASQHSS 412

Query: 403 TAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNL 462
            A+ L  +   ++D +    + ++  I +S   I  L   + NI  + +VI +IS QTNL
Sbjct: 413 DARSLAEDGQQVVDKTIAAMQQLSAKISDSCGNIETLNSNTVNIGQILEVITSISQQTNL 472

Query: 463 LALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTR 522
           LALNAAIEAARAGE GRGFAVVADEVR+LA +TQ S   +Q +I +LQ  ++ A  +MT 
Sbjct: 473 LALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQKMIEELQVGAREAVAIMTD 532

Query: 523 NVSLIHET-QVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRY 581
           +      +  +AN+A       ++ ++ EI  +N  V+TA  EQ  V E +   + +I  
Sbjct: 533 SQRQSESSVGIANQA-GERLGSVTQRIGEIDGMNQSVATATEEQTAVVESINVDITEINT 591

Query: 582 LVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
           L QE +  ++ T +A  ++      L   +  F+I
Sbjct: 592 LNQEGVENLQSTLRACADLEQQAARLKQLVGSFRI 626