Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  161 bits (408), Expect = 8e-44
 Identities = 140/499 (28%), Positives = 239/499 (47%), Gaps = 44/499 (8%)

Query: 155 PVYVGNDIVGSVALDIAGD----QIASPN-----GSGMFMMTDRNFNVFASDLTHSTLIG 205
           P+ +     G V  DI  D     ++S N     G+G   +   N  + A     + L+G
Sbjct: 218 PIIIDGKFHGIVGADIGVDFMQQLLSSANSQLYGGAGQIALISNNGRLAAYSRDRN-LLG 276

Query: 206 KDLTK-----EKPLFKNLVSGQ-YVTFSDADSHWFAVSQTEIDGENKLFTIIDIQQIVQT 259
           K   +     E+ L K L +GQ +     A             G +  + ++      + 
Sbjct: 277 KPAAQLLDADEQALVKQLPAGQTHYRIDHARGRVALFLPFSFPGTDARWVLMLELPTAEV 336

Query: 260 YKRDIQLIIA----GFSGFSCVMLIGLY---------WVLSKELSGVRQIREWILALS-- 304
            K   QL++A      S  + +++IG+          W++S+ ++  R +R+ ++ L   
Sbjct: 337 MKELDQLMVALGEESRSNLAAMLVIGMLIAFAGLLAIWLISRRIT--RPLRDMVVMLDNI 394

Query: 305 ---DGQIKERRPIKFHNELDTIAQS----LENLQFRLLDVVRNSHRTMNDLSIKQTDITY 357
              +G + +R  I   NEL  IA      L  LQ  + +VV +S + ++D S    DI  
Sbjct: 395 SQGEGDLTQRLNIDSRNELGQIAAGFNAFLARLQGMISEVV-SSVQKVSDASEHTADIAI 453

Query: 358 SIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDS 417
             +      Q +L  IE VATA  +++ T+ DV + A  A   A  A +   +   I+  
Sbjct: 454 RTDKGV---QTQLAEIELVATAVHEMTATAQDVARNATQAAEAANNADRAANQGRHIVQD 510

Query: 418 SSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQ 477
           +      +   I  +  ++  L   S+NI ++   I +I++QTNLLALNAAIEAARAGEQ
Sbjct: 511 TGATIAELASEIGRAVDVVQTLARDSENIDAILVTIRSIAEQTNLLALNAAIEAARAGEQ 570

Query: 478 GRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRAL 537
           GRGFAVVADEVR+LA KTQQ+T +IQ +I +LQ  ++   QVM ++ +    +     A 
Sbjct: 571 GRGFAVVADEVRNLAQKTQQATGEIQQMIQQLQGGTRDVVQVMEQSQNRTRRSVEQADAA 630

Query: 538 IASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQAN 597
             +   I+  V  I+++N+ +++AA EQ  V ED+ + + +I  + Q+  +  +   QA+
Sbjct: 631 AEALQAITQAVSLINDMNNQIASAAEEQSAVAEDINRNVTNIGQVAQQVAAGADEASQAS 690

Query: 598 QNISDLTTNLNDALSFFKI 616
             ++ L       ++ F++
Sbjct: 691 AGLTRLAEQQRRLINQFRV 709