Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  140 bits (352), Expect = 2e-37
 Identities = 93/272 (34%), Positives = 157/272 (57%), Gaps = 5/272 (1%)

Query: 319 ELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVAT 378
           +++   + LE     ++  + +S R ++D +    D+  ++ G+T ++ ++    + +AT
Sbjct: 228 QIEFAMKMLETEAGAMVGRIADSSRQLSDHA---RDLLGAMHGSTQSAARQQQETDLIAT 284

Query: 379 ATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQ 438
           A  Q+S +  +V   AQ     A  A    A+  +++  +      +   I ++ ++I+Q
Sbjct: 285 AIQQMSASVQEVALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQ 344

Query: 439 LREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQS 498
           L   S  IS V DVI+ I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T  +
Sbjct: 345 LENHSQEISRVLDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLA 404

Query: 499 TIDIQGIILKLQEQSQLADQVMTRN-VSLIHETQVANRALIASFNLISDKVLEISNINSI 557
           T DIQ +I  LQ  ++ A  VM R+     H    A++A   S + I+ +V EIS ++S 
Sbjct: 405 TTDIQRMIGSLQTGAREAVDVMQRSREQAEHSVSHADQA-EHSLSGINSRVNEISAMSSQ 463

Query: 558 VSTAANEQKIVTEDVAKQMEDIRYLVQENLSA 589
           ++ A ++Q  V E++++ +  IR    E++++
Sbjct: 464 IAAAVDQQSSVGEEISQSIVSIRGSSDEHVAS 495