Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  149 bits (375), Expect = 4e-40
 Identities = 100/323 (30%), Positives = 177/323 (54%), Gaps = 10/323 (3%)

Query: 290 LSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLS 349
           L+ ++Q+ E    + D  + +       +E   IA +++ L+     +V         LS
Sbjct: 198 LAPLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLS 257

Query: 350 IKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIA 409
               ++  +++ +T ++ ++    +QVATA  Q++ +  +V   AQ     A  A    A
Sbjct: 258 QHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETA 317

Query: 410 ESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAI 469
              ++++ +      +   I ++  +I++L   S++I+ V DVI  I++QTNLLALNAAI
Sbjct: 318 TGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAI 377

Query: 470 EAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRN-----V 524
           EAARAGEQGRGFAVVADEVR+LA +TQQST +I G+I  LQ  ++ A +VM R+      
Sbjct: 378 EAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQ 437

Query: 525 SLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQ 584
           S+ H  Q A      S + I+ +V EIS ++  ++ A  +Q  V+E++ + +  IR    
Sbjct: 438 SVEHAAQAAR-----SLHGINSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSD 492

Query: 585 ENLSAMERTKQANQNISDLTTNL 607
            +++   R++Q+   +++L  ++
Sbjct: 493 HHVANGLRSRQSASGVAELANSM 515