Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  147 bits (372), Expect = 1e-39
 Identities = 104/318 (32%), Positives = 165/318 (51%), Gaps = 8/318 (2%)

Query: 303 LSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGN 362
           L +G +  R  +   +E+  IA  L NL   + D   +S   M+  S + TD+   +  +
Sbjct: 361 LGEGDLSARVAVVSKDEVADIANGL-NL---MADAFASSISHMDRTSYELTDVASRLGAS 416

Query: 363 TNNSQQELGL----IEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSS 418
              ++Q +       EQVATA  +++ +  DV Q  + A L A+ A         I+  +
Sbjct: 417 IGLAKQSMNAQQAETEQVATAINEMTASVADVAQNTEGAALAADEANTASRNGLRIMHQA 476

Query: 419 SKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQG 478
               + +   +  S Q +  L   S +I  V  VI+ I+DQTNLLALNAAIEAARAGEQG
Sbjct: 477 HSTIQALAEEVELSAQKVQALALHSQSIGGVIQVISTIADQTNLLALNAAIEAARAGEQG 536

Query: 479 RGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRALI 538
           RGFAVVADEVR+LA +TQ ST +I+GII +LQ  +  A Q M       H    A     
Sbjct: 537 RGFAVVADEVRTLASRTQASTEEIRGIIQQLQSATDAAVQQMQAGQQKAHACISAASDAS 596

Query: 539 ASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQ 598
            S + IS  V  I  +N+ +++AA +Q  V+ED+ + + +IR      +  ++       
Sbjct: 597 GSLSSISQGVERIVEMNTQIASAAVQQHAVSEDINRNVMEIRNSSGTLMLGIDNNAVTAD 656

Query: 599 NISDLTTNLNDALSFFKI 616
            ++ + +++ + ++ FK+
Sbjct: 657 ELARVASDMRNVVARFKL 674