Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  161 bits (408), Expect = 7e-44
 Identities = 171/637 (26%), Positives = 274/637 (43%), Gaps = 45/637 (7%)

Query: 8   VFLLLACIITLAFTAFFYHSKLSDQTKSISSLSSQQAQE---RLQSYQDSLDFYKKLNTS 64
           + L  A I+ +AF+ F   +    +    SS+ S+  Q      Q+ Q  L+   +L  S
Sbjct: 10  ILLAAALIVVVAFSVFIVVNDYRQRQSLKSSVKSELQQLGTLTTQNIQTWLESRMQLLQS 69

Query: 65  LSVAIANSLRDKAVEELNAIALRIQENHGFIGVTFASLDGTMFTDIGT---LDWNAKTLR 121
           +S  IA     K + +L         +  F    F S +G MF+        D++ +   
Sbjct: 70  MSQQIAAD--GKELPQLQRAIGLPAYSESFQLSYFGSTEGVMFSVPSANRPADYDPRA-- 125

Query: 122 RDWFVKTVELGTKHYTAFDIDKTTGQHVLTIATPVYVGNDIVGSVALDIAGDQIASPNGS 181
           R W+           T   I  ++G+ V+T+ATPV   N  VG    DIA D +     S
Sbjct: 126 RGWYKAAQNAPGTIVTEPYIAASSGKLVMTMATPVKFQNQFVGVAGADIALDNVTKIINS 185

Query: 182 GMFMMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNLVSGQYVTFSDADSHWFAVSQTEI 241
             F   D +   F        L+  D    K + KN +S  Y T    ++       TEI
Sbjct: 186 LNF---DGHGYAFLVSADGKILVHPD---SKLVLKN-ISEAYPT----NTPKITTGVTEI 234

Query: 242 D-GENKLFTIIDIQQIVQTYKRDIQLIIAGFSGFSC-------------------VMLIG 281
           D G+N         Q V T    + L++   S ++                    ++L+G
Sbjct: 235 DSGKNPEIISFTPVQGVSTANWYVALVLEQDSAYAMLAEFRASAITAMVVVVVVIILLLG 294

Query: 282 LYW-VLSKELSGV-RQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVR 339
           L   VL + L  + R +R+  +A  +G + +R  I   +E   +A+S      R+   +R
Sbjct: 295 LLIRVLMQPLHQMGRAMRD--IADGEGDLTKRLAITSQDEFGELAESFNRFVERIHTSIR 352

Query: 340 NSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAEL 399
               T   L    T +      +  NS Q+    E VA A  +L   + ++ Q A     
Sbjct: 353 EVASTAAQLGEVATRVVKVSNASMGNSDQQANRTESVAAAINELGAAAQEIAQNAARTSQ 412

Query: 400 NAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQ 459
            +  A  L ++  +++  + K    ++  I ES   I  L   + NI  + +VI +IS Q
Sbjct: 413 QSSDASGLASDGQNVVQQTIKAMNELSGKISESCVNIESLNGKTANIGQILEVITSISQQ 472

Query: 460 TNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQV 519
           TNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ S   +Q +I +LQ  ++ A   
Sbjct: 473 TNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQTMIEELQVGARDAVTN 532

Query: 520 MTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDI 579
           MT +     ++             ++ ++ EI+ +N  V+ A  EQ  V E +   +  I
Sbjct: 533 MTESQRQSEDSVGIANLAGERLGSVTRRIEEINGMNQSVAAATEEQTSVVESINVDITHI 592

Query: 580 RYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
             L Q  +  + +T +A  ++ +    L   +  F+I
Sbjct: 593 NTLNQLGVDNLRQTLEACNSLEEQAARLQQLVGSFRI 629