Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  162 bits (409), Expect = 6e-44
 Identities = 104/318 (32%), Positives = 175/318 (55%), Gaps = 8/318 (2%)

Query: 303 LSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGN 362
           L+ G +  +     H+E   ++++   L   L  ++ +     N L+    + +      
Sbjct: 360 LASGDLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAAAEETSAITSQT 419

Query: 363 TNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQT 422
           T   Q++   ++QVATATT+LS ++  V   A  A    + A +       I D + +  
Sbjct: 420 TIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQIKQADEETQHMRTIADENKRTI 479

Query: 423 EMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFA 482
             +   + ++ ++IN++   S +I S+ DVI  I++QTNLLALNAAIEAARAGEQGRGFA
Sbjct: 480 LSLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFA 539

Query: 483 VVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVM----TRNVSLIHETQVANRALI 538
           VVADEVRSLA +TQ ST +IQ +I  LQ+ +Q A  VM     +  S + +T+ AN+AL 
Sbjct: 540 VVADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCVEKTEQANQAL- 598

Query: 539 ASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQ 598
                IS  V +  +  + ++ AA EQ +V++ V++++E I  + +E     E+T +++ 
Sbjct: 599 ---QTISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAEQTAKSSH 655

Query: 599 NISDLTTNLNDALSFFKI 616
            ++ L   L  ++  F++
Sbjct: 656 EVARLAEELQSSVKEFRV 673



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 73/343 (21%), Positives = 139/343 (40%), Gaps = 50/343 (14%)

Query: 305 DGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDI--------- 355
           D   ++   +K   +L+  A    +  F L+D+  + ++T  +++     I         
Sbjct: 136 DSLSQQEELLKLREKLENSADDASSNLFDLIDLESSQNQTEREIAAAAGAIDTTMTGIIT 195

Query: 356 -TYSIEGNTNNSQQEL------GLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKL- 407
             Y +      S+ EL       ++ +V T    +S     ++     + LN ++ + L 
Sbjct: 196 TVYDLVAAEERSKYELISKELDYMLGEVKTKMEYISRHGEGIIDADLVSTLNDDSTKVLK 255

Query: 408 IAESHDI--------IDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVT--------D 451
           + E  D         IDS+   +E +TL    +  +  Q++  + +I +VT        +
Sbjct: 256 MLEGKDTLVTLKSRQIDSTQLTSEKLTLVEKNALTVTEQMKRLAKDIETVTNDISNQALN 315

Query: 452 VINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSL-AVKTQQSTIDIQGIILKLQ 510
            IN+ S +T +L + A + A         FAVV    RSL  V    + +    +  KL 
Sbjct: 316 DINSASLRTLILVVIAIVVAVVI-----SFAVVRPLKRSLDEVNGALNVLASGDLTHKLD 370

Query: 511 EQSQLADQVMTRNVSLIHETQVANRALIASF----NLISDKVLEISNINSIVSTAANEQK 566
           +        ++RN + + ++    R+LIAS     N ++    E S I S  +    EQK
Sbjct: 371 DTGHDEFAELSRNCNRLVDSL---RSLIASILDRSNQLAAAAEETSAITSQTTIGIQEQK 427

Query: 567 IVTEDVAKQMEDIRYLV-QENLS---AMERTKQANQNISDLTT 605
              + VA    ++     Q N+S   A+ + KQA++    + T
Sbjct: 428 SQVDQVATATTELSSSAHQVNMSADDALSQIKQADEETQHMRT 470