Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  154 bits (388), Expect = 1e-41
 Identities = 117/412 (28%), Positives = 203/412 (49%), Gaps = 16/412 (3%)

Query: 215 FKNLVSGQYVTFSDADSHWFAVSQTEIDGENKLFTIIDIQQIVQTYKRDIQLIIAGFSGF 274
           FK LVS +     D DS   A  +  I    K    +  Q +      +   +      F
Sbjct: 215 FKALVSKEQELGLDKDSGSMASLRDSISSAEKSLVQLKAQSMDAISDAESATVTISIVVF 274

Query: 275 SCVMLIGLYWVLSKELSGVRQIREWILALSDG--------QIKERRPIKFHNELDTIAQS 326
             + L+    ++   L+ +R I E +  +SD          +  R   K  +E+  IA+ 
Sbjct: 275 ILITLV----LIGFTLAIIRSIMEPVQRISDAISRIEATKDLTLRCDTKVDDEIGQIARH 330

Query: 327 LENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCT 386
             ++      ++R    ++  ++    +++ +    +    ++L   + VATA T++  T
Sbjct: 331 FNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITEMGAT 390

Query: 387 SFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNI 446
             ++    + A   A        +    ++ + ++ + +   + +S Q++++L + S+ I
Sbjct: 391 IDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDSETI 450

Query: 447 SSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGII 506
            SV DVI  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA++TQ+ST +I GII
Sbjct: 451 GSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIAGII 510

Query: 507 LKLQEQSQLADQVM--TRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANE 564
             LQ +++   Q+M  T+   +    Q A+    A    I+  V  I ++++ ++ A  E
Sbjct: 511 QTLQSRTRSIVQLMEATQRQGIESADQAASAG--ALLEQINADVTNIMDMSTQIAAAIEE 568

Query: 565 QKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
           Q +V  +V K +  IR +  E+  A +   +A+ ++   T  L  A+S FKI
Sbjct: 569 QSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQVLYQAVSLFKI 620