Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  163 bits (413), Expect = 2e-44
 Identities = 107/318 (33%), Positives = 174/318 (54%), Gaps = 8/318 (2%)

Query: 303 LSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGN 362
           L+ G +  +     H+E   ++++   L   L  +++      N L+    + +      
Sbjct: 361 LASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQT 420

Query: 363 TNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQT 422
           T   Q++   ++QVATATTQLS ++  V   A  A      A +       I D + +  
Sbjct: 421 TAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRTI 480

Query: 423 EMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFA 482
             +   + ++ Q+IN++   S +I S+ DVI  I++QTNLLALNAAIEAARAGEQGRGFA
Sbjct: 481 LALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFA 540

Query: 483 VVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVM----TRNVSLIHETQVANRALI 538
           VVADEVRSLA +TQ ST +IQ +I  LQ+ +Q A  VM     +  S + +T+ AN AL 
Sbjct: 541 VVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVAL- 599

Query: 539 ASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQ 598
                IS+ V    +  + ++ AA EQ +V++ V++++E I  + +E  +  ++T Q++ 
Sbjct: 600 ---ESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSH 656

Query: 599 NISDLTTNLNDALSFFKI 616
            ++ L   L  ++  FK+
Sbjct: 657 QVAQLAEELQASVGEFKV 674



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 70/371 (18%), Positives = 144/371 (38%), Gaps = 49/371 (13%)

Query: 242 DGENKLFTIIDIQQIVQTYKRDIQLIIAGF-SGFSCVMLIGLYWVLSKELSGVRQI-REW 299
           D  + L  +ID++      +R+I    +   + FS ++      V +KE S    I +E 
Sbjct: 158 DTASLLLDLIDLETSQDPTEREIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKEL 217

Query: 300 ILALSDGQIKERRPIKFHNELDTIAQSLENLQ------FRLL---DVVRNSHRTMNDLSI 350
              +S+ Q K    +  H E     ++L+N+       F +L   D +        D ++
Sbjct: 218 DYIISEAQNKLEY-VSRHWEGVIDQEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNL 276

Query: 351 KQTDITYSIEGNTNNSQQELGLIEQVATATTQ-LSCTSFDVMQQAQSAELNAETAQKLIA 409
           + + +  ++E N     Q +G + +   +T+Q +S  + D +  A    L    A  LIA
Sbjct: 277 QASQLLNTVESNATAVNQSMGSLNKAIESTSQAVSVKAIDEIDSASYKTL----ALVLIA 332

Query: 410 ESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVI--NNIS--------DQ 459
                          + +++  S  +I  L+   D +++  +++   N++        D+
Sbjct: 333 ---------------IVVAVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHDE 377

Query: 460 TNLLA--LNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLAD 517
              L+   N  +++ R   QG     + D    LA   ++++         +QEQ    D
Sbjct: 378 FAELSRNCNRLVDSLRTLIQG-----ILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVD 432

Query: 518 QVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQME 577
           QV T    L       + +   + N I     E  ++ +I          + ++VAK  +
Sbjct: 433 QVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQ 492

Query: 578 DIRYLVQENLS 588
            I  +  ++ S
Sbjct: 493 VINKVHSDSAS 503