Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  163 bits (413), Expect = 2e-44
 Identities = 102/340 (30%), Positives = 180/340 (52%), Gaps = 2/340 (0%)

Query: 277 VMLIGLYWVLSKELSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLD 336
           VML+    +++   + V+ + +  +A  +G + +R  ++  +E+  + ++      +L  
Sbjct: 217 VMLVAAQRMVNPIHNMVQNLED--IAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQG 274

Query: 337 VVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQS 396
           ++++  R   ++     +I+                 +QV TA T++S T+ +V      
Sbjct: 275 IIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQ 334

Query: 397 AELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNI 456
                + A + +  + + +DSS  +   +   I  +   IN L E S  I+SV  VI  I
Sbjct: 335 VAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGI 394

Query: 457 SDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLA 516
           ++QTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA +TQ ST++I  ++ +L     LA
Sbjct: 395 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLA 454

Query: 517 DQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQM 576
              M  +    H +  ++RA+  S   ++  V  I+++++ ++TAA EQ  VTE++ + +
Sbjct: 455 VSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNV 514

Query: 577 EDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
             I+ +V E L A       +Q +++   NL+  +  FK+
Sbjct: 515 FAIQEIVNELLQASNSASDTSQGLANEGRNLDTLVGQFKV 554



 Score = 39.7 bits (91), Expect = 3e-07
 Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 69/311 (22%)

Query: 333 RLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELG------------LIEQVATAT 380
           R+++ + N  + + D++  + D+T  ++   ++    LG            +I+ VA AT
Sbjct: 224 RMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARAT 283

Query: 381 TQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLR 440
            ++   + ++  Q       A  AQ+LI+ ++                  E+ Q++  + 
Sbjct: 284 VEVKSGADNISSQT------AAMAQQLISHNN------------------ETDQVVTAIT 319

Query: 441 EFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTI 500
           E S   S V             ++     EA +A  Q  G A    +     V T  + I
Sbjct: 320 EMSATASEVA------------MSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEI 367

Query: 501 DIQ-GIILKLQEQSQLADQVMTRNVSLIHETQVA--NRALIAS--------FNLISDKVL 549
           D+  G I  L EQSQ  + V++    +  +T +   N A+ A+        F +++D+V 
Sbjct: 368 DMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 427

Query: 550 EISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLND 609
            +          A+  +  T ++ + + ++  LV   +S+ME ++Q+       +  ++D
Sbjct: 428 SL----------ASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISD 477

Query: 610 ALSFFKIELTS 620
           +L      +TS
Sbjct: 478 SLGAVTSAVTS 488