Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  161 bits (408), Expect = 7e-44
 Identities = 130/465 (27%), Positives = 224/465 (48%), Gaps = 39/465 (8%)

Query: 161 DIVGSVALDIAGDQIASPNGSGMF--MMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNL 218
           D  G V L     QI   + S ++   +T    N     LT + L G+ L         L
Sbjct: 204 DAKGDVKLHSDTSQIGKASLSSLYGGNVTRELLNKGDFGLTQTELDGETL---------L 254

Query: 219 VSGQYVTFSDADSHWFAVSQTEIDGENKLFTIID---IQQIVQTYKRDIQLIIAGFSGFS 275
           V+  Y+   D    W+ V+Q       ++F +++    Q +V T      LI A F G S
Sbjct: 255 VASSYIPSMD----WYLVAQVP---RAEVFALLEESAYQILVWTV-----LIAAAFIGLS 302

Query: 276 CVMLIGLYWVLSKELSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQS----LENLQ 331
             +   +   ++K    ++ I +      +G +++R P++ ++EL  +A+     +E +Q
Sbjct: 303 TFVSASVSQPIAKVADMLQDIGQ-----GEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQ 357

Query: 332 FRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVM 391
             +++V   S +    LS    D+    +   ++SQ +      V TA  ++  T  ++ 
Sbjct: 358 HSIIEVTDTSVQ----LSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVHEIA 413

Query: 392 QQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTD 451
             A  A  NA+ A    +    ++  +      ++  + +   +I  L   + +I S+ D
Sbjct: 414 GNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGSILD 473

Query: 452 VINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQE 511
           VI  +SDQTNLLALNAAIEAARAGE GRGFAVVA+EVR+LA +T  ST ++Q +I  LQ 
Sbjct: 474 VIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQS 533

Query: 512 QSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTED 571
           ++  A + MT++ S   E   A      +   IS ++  I+++N  V+ A  EQ  V ED
Sbjct: 534 EAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVED 593

Query: 572 VAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
           + + + +I  + Q      +   QA+Q+++ L   L+  ++ FK+
Sbjct: 594 INRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638