Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  147 bits (371), Expect = 2e-39
 Identities = 103/337 (30%), Positives = 173/337 (51%), Gaps = 7/337 (2%)

Query: 284 WVLSKEL-SGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRL---LDVVR 339
           W+L + + + +RQ  +    +++G +     I   +E   +   L  +Q  L   LD ++
Sbjct: 363 WLLVRAIVNPMRQAIDTFKLIAEGDLTSDIDISRRDEAGQLLCQLATMQATLKAMLDQIQ 422

Query: 340 NSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAEL 399
            + R M+    + + +   +      SQQ+L  ++ +A AT + S +  +V   A     
Sbjct: 423 EASRQMDQ---RCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAGETAS 479

Query: 400 NAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQ 459
            A+ +++L+ ES+  I  S   T  V  ++  S   +++L    D I  +T VI  I+DQ
Sbjct: 480 AAQNSERLVEESNTQIGRSMAVTNRVVEAVTGSSATLHELNTAIDQIGQITQVIKEIADQ 539

Query: 460 TNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQV 519
           TNLLALNAAIEAARAGE GRGFAVVADEVR LA +T  ST DI G I  +Q  +  A   
Sbjct: 540 TNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTTTSTADITGNIGAIQGATHEAVNR 599

Query: 520 MTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDI 579
           M + V  + E     R  +A    I+    ++S +   +S A+ +Q I +++V   ME I
Sbjct: 600 MEQAVREVEEGIGMMRESVAGLEGITAASQQVSAMARQISEASQQQSIASQEVNGSMEHI 659

Query: 580 RYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
             L+++N +  +  ++A + +     +L   L+ F++
Sbjct: 660 SVLIEQNTATAQEAQRATEALVSTAEDLRAILASFRL 696