Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  156 bits (395), Expect = 2e-42
 Identities = 115/359 (32%), Positives = 186/359 (51%), Gaps = 17/359 (4%)

Query: 267 IIAGFSGFSCVMLIGLYWVLSKELSGVRQIRE---WILA----LSDGQIKERRPIKF--H 317
           II GFS         +++V+      +RQI+    W+L     +S G +  +  +     
Sbjct: 196 IIVGFST--------IFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTNKLNMNAFAR 247

Query: 318 NELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVA 377
           +E   +A+S   +Q  L  +V     ++  LS    +I+     ++NN + +   + Q+A
Sbjct: 248 DEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQLA 307

Query: 378 TATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIIN 437
           TA  ++  T  DV +    A   A  A     +  + ++ S  + + V  +I  +  +I 
Sbjct: 308 TAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVVIR 367

Query: 438 QLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQ 497
           +L + S NI  V +VI  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +TQ 
Sbjct: 368 KLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQD 427

Query: 498 STIDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSI 557
           ST  I  II +LQ ++  A++ M ++  ++ ET    R    S   IS  V  IS +N  
Sbjct: 428 STSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQMNIQ 487

Query: 558 VSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
           ++TA  EQ  V+E++ + + +I    ++  +  ++   A  ++S L T L D +  F I
Sbjct: 488 IATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKKFHI 546