Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (410), Expect = 4e-44
 Identities = 115/404 (28%), Positives = 199/404 (49%), Gaps = 20/404 (4%)

Query: 216 KNLVSGQYVTFSDADSHWFAVSQTEIDGENKLFTIID---IQQIVQTYKRDIQLIIAGFS 272
           K  V+  Y+   D    W+ V+Q     E ++F ++     Q ++ T      +I AGF 
Sbjct: 256 KTFVASSYIPSMD----WYLVAQVP---EAEVFALLRDAVYQILIWTL-----IIAAGFI 303

Query: 273 GFSCVMLIGLYWVLSKELSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQF 332
             + V+   +   +++  +  R I E      +G +++R P+   +E+  +AQ   +   
Sbjct: 304 MLAIVVAGSVSRPIAQVAAMFRDIGE-----GEGDLRQRLPVNGKDEIAQLAQGFNSFIS 358

Query: 333 RLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQ 392
           ++ D V    +T   L +   D++   +    +S ++      V TA  ++  T  ++  
Sbjct: 359 KIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIAS 418

Query: 393 QAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDV 452
            A  A + A+ A         ++  +      ++  + +  ++I  L   + +I  + DV
Sbjct: 419 NAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDV 478

Query: 453 INNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQ 512
           I  IS+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T  ST ++QG+I KLQ +
Sbjct: 479 IRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSE 538

Query: 513 SQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDV 572
           +  A   M ++ +  HE   A      S   IS ++  IS++N  V+ A  EQ  V ED+
Sbjct: 539 ASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDI 598

Query: 573 AKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
            + + +I  + Q   S  +   QA+  ++ L   L+  ++ FK+
Sbjct: 599 NRNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642