Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  154 bits (390), Expect = 9e-42
 Identities = 145/463 (31%), Positives = 223/463 (48%), Gaps = 57/463 (12%)

Query: 183 MFMMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNLVSGQYVTFSDADSHWFAVSQTEI- 241
           + +  D NF  F    T  T    +L K       +   + +   D D   +A+ +  + 
Sbjct: 200 LLLPKDGNFVPFGGTFTTDTSASSELNKV------MQGTEVIRTIDLDGKSYALYRHGMQ 253

Query: 242 DGENKLFTIIDI-------QQIVQTYKRDIQLIIAGFSGFSCVMLIG--LYWVLSKELSG 292
           D   K F ++DI       +Q +   +   +LI+ GF  F    LIG  + W ++K ++ 
Sbjct: 254 DYSGKTFGVLDIALDRSHSEQAMSDIR--FKLIMIGFIAF----LIGTAIAWFIAKSIT- 306

Query: 293 VRQIREWILALSD-----GQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMND 347
            R I E   AL+D     G +  R  +K  +E+  +A +      ++       H T+  
Sbjct: 307 -RPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLALAFNRFAEKI-------HATVAQ 358

Query: 348 LSIKQTDITYSIE---GNTNNSQQELGL----IEQVATATTQLSCTSFDVMQQAQSAELN 400
           +S   + +  S E     TN +QQ         EQVATA  +++ T  +V   A  A   
Sbjct: 359 VSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHNATDAADA 418

Query: 401 AETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQT 460
           A  A +       +++       ++   I  + + IN+L   +  I SV  VI NI+DQT
Sbjct: 419 ATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVLVVIRNIADQT 478

Query: 461 NLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVM 520
           NLLALNAAIEAARAGEQGRGFAVVADEVR+LA +TQ ST +IQ +I  LQ  ++     M
Sbjct: 479 NLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQHSAKSTVSTM 538

Query: 521 ------TRN-VSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVA 573
                 T+N VSL+HE   A  AL A    I+  V  IS +N  +++AANEQ  V+ ++ 
Sbjct: 539 NTSTATTQNCVSLVHE---AGEALEA----ITQAVSTISQMNIQIASAANEQCAVSAEIN 591

Query: 574 KQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
           K + +I  +      +  +T +A   ++ L+  L   L+ F+I
Sbjct: 592 KNVNNINDITINATESAVQTARAGDELAQLSMRLTTLLAQFRI 634