Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (393), Expect = 3e-42
 Identities = 102/320 (31%), Positives = 175/320 (54%), Gaps = 8/320 (2%)

Query: 301 LALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIE 360
           +A  +G + +R   +  +E+  +A +      ++ D+V +       L      +  ++E
Sbjct: 230 IAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVE 289

Query: 361 GNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSK 420
            +  +++        VATA  Q+  T+ ++    Q A   A + +    +S  +ID++ +
Sbjct: 290 ESNQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVR 349

Query: 421 QTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRG 480
            TE +   +  S+ I  +L + S  I S+ DVI  I++QTNLLALNAAIEAARAG  GRG
Sbjct: 350 DTEKLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRG 409

Query: 481 FAVVADEVRSLAVKTQQSTIDIQGIILKLQ----EQSQLADQVMTRNVSLIHETQVANRA 536
           FAVVADEVR+LA +TQ ST +IQ II ++Q       Q   Q   ++  L  + Q A +A
Sbjct: 410 FAVVADEVRALANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQA 469

Query: 537 LIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQA 596
           + A   LI+     IS++N+ +++A  EQ +VTE++ + + +I  L + ++ A E   +A
Sbjct: 470 MAAILELIA----HISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRA 525

Query: 597 NQNISDLTTNLNDALSFFKI 616
            Q++ D++ +++  L  FKI
Sbjct: 526 AQSLQDISQDMSHTLGQFKI 545