Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (590), Expect = 5e-65
 Identities = 134/358 (37%), Positives = 213/358 (59%)

Query: 258 QTYKRDIQLIIAGFSGFSCVMLIGLYWVLSKELSGVRQIREWILALSDGQIKERRPIKFH 317
           + Y   I++ IA     S ++L     +    ++ ++ ++ +I  L++G + +R     +
Sbjct: 181 EIYDESIKMTIAILVIVSLLVLTTSIVISKFIITSIKTVQHFIAKLANGDLTDRITDIGN 240

Query: 318 NELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVA 377
           NEL  +AQ   +   ++ ++        N+ +     +  ++    NNS+Q L  +EQ+A
Sbjct: 241 NELGFLAQDCNHTADKISEMTEQLITVANNTATSAEVLASTMNQVENNSKQMLVQVEQIA 300

Query: 378 TATTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIIN 437
           TA  ++S T+ +V + A  AE +A  A + + E +  +  S+  +  +  +I +S  I+N
Sbjct: 301 TALNEMSSTALEVSRNATEAETSASEAMENVTEGNKSLGESNNISVKIGTAIRDSGTIVN 360

Query: 438 QLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQ 497
           QL++FS  I SV DVI +IS+QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA KTQQ
Sbjct: 361 QLKDFSIEIGSVIDVITSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAAKTQQ 420

Query: 498 STIDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSI 557
           ST+DIQGII KLQ Q++ AD  M  N SL+ E+Q+ +  +  +F+ IS  V  ISN+N++
Sbjct: 421 STVDIQGIISKLQSQAEKADHYMKANASLLDESQIISEKVRNAFDGISASVNAISNVNTV 480

Query: 558 VSTAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFK 615
           V+TA++EQ  VTED++K +     +V +N+  +    +A  ++          L+FFK
Sbjct: 481 VATASSEQSSVTEDISKNISSTVEMVDQNVMGVGNASKACHDVLTEAGKQKQLLAFFK 538