Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (380), Expect = 1e-40
 Identities = 109/355 (30%), Positives = 181/355 (50%), Gaps = 9/355 (2%)

Query: 266 LIIAGFSGFSCVMLIGLYWVLSKELSGVRQIREWI--LALSDGQIKERRPIKFHNELDTI 323
           L+I G +  S + ++ +  V+   ++ +R I+  +  LA +DG + +   +  H EL  +
Sbjct: 355 LVIVGLA-VSILAVVTISIVIRSVIAPLRLIQGRVENLASADGDLTQSIEVDSHAELIAL 413

Query: 324 AQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQL 383
            +   +   +L D++            +        E   ++  ++ G IE V TA  ++
Sbjct: 414 GKGFNSFIHKLKDLISELKALAGQTQEESLSSAKIAELTRDSVHRQYGEIESVVTAVNEM 473

Query: 384 SCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQI---INQLR 440
           S T+ +V   A+++E  A   + +    H   +S +K  + VT    ES Q    ++++ 
Sbjct: 474 SATALEV---AKASEQTAAETEAMSRNVHLSEESLTKAMDYVTTMSQESMQAKVAVSKVA 530

Query: 441 EFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTI 500
           E S NIS + +VI++I+ QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA KTQ ST 
Sbjct: 531 ESSTNISRILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTD 590

Query: 501 DIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVST 560
           DI  +I  LQ++ Q A  ++ +               + S N +  ++ EIS   + ++ 
Sbjct: 591 DISVLIDALQKEVQSASAIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISAQVTHIAA 650

Query: 561 AANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFK 615
           AA EQ  VTE+V + +  I     E        +Q++  +++L    +  L   K
Sbjct: 651 AAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLK 705