Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (434), Expect = 7e-47
 Identities = 159/641 (24%), Positives = 283/641 (44%), Gaps = 45/641 (7%)

Query: 1   MIKKIISVFLLLACIITLAFTAFFYHSKLSDQTKSISSLSSQQAQERLQSYQDSLDFYKK 60
           +   + +VF+ +A +++++  ++   +   D T+        +  +   ++ + +  + +
Sbjct: 10  LFSSLFAVFITVAVLVSIS--SYVIRNHAIDNTQG-------EIDQLANTFAEGIGLWMQ 60

Query: 61  LNTSLSVAIANSLRDKAVEELNAIALRIQENHGFIGVTFASLDGTMFTDIGTLDW-NAKT 119
              +   ++  ++      ++    L+     GF    F    G M+     L+  N   
Sbjct: 61  DRKTAITSLKKTVEADPNVQITPYLLQAHNAMGFALTYFGDEQGNMYRQDPALNTANYDP 120

Query: 120 LRRDWFVKTVELGTKHYTAFDIDKTTGQHVLTIATPVYVGNDIVGSVALDIAGDQIASP- 178
             R W++          TA  +  T  + V+TIA PV V   + G  A ++  DQ+    
Sbjct: 121 RERPWYMDAKAANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTIDQLTDAV 180

Query: 179 -----NGSGMFMMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNLVSGQYVTFSDADSHW 233
                 G G  +M D    + +   T   L  + LTK    F      Q    +      
Sbjct: 181 QRLEVPGKGYTLMVDTAGLIISHPNTQ--LNNQQLTKIDSHFTPSWLSQRANAN------ 232

Query: 234 FAVSQTEIDGENKLFTIIDIQQ-----IVQTYKRDIQLIIAGFSGFSCVMLIGLYWVLSK 288
             + + E+DG  +L  +  +       I    K++I       + +   + +GL  +   
Sbjct: 233 -TMEERELDGGTQLVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLLVIFGL 291

Query: 289 ELSGV-----RQIREWILALSD-----GQIKER-RPIKFHNELDTIAQSLENLQFRLLDV 337
            L  +     + +    LAL+D     G +  R      H+E+  +A        RL  +
Sbjct: 292 VLVAIFKMQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGM 351

Query: 338 VRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSA 397
           +   H     L  +    + S   N+   + +   +  VATA T+++  + ++   A+  
Sbjct: 352 ISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHT 411

Query: 398 ELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNIS 457
              A+ A  L       +  S +    +   +  + +II++L E S  I+S+   I+ I+
Sbjct: 412 AQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIA 471

Query: 458 DQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLAD 517
           +QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ +T  ST +IQ +I  LQ+ +  A 
Sbjct: 472 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAV 531

Query: 518 QVMTRNVSLIHETQVAN-RALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQM 576
           + MT++  +  ET VA+  +   S   IS  + EIS++ S ++TAA EQ  VT ++ +  
Sbjct: 532 KSMTQSHDMA-ETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNT 590

Query: 577 EDIRYLVQENLSAMERTKQA-NQNISDLTTNLNDALSFFKI 616
           E IR  V ENLS   ++    +Q ++ L  +L   +S FK+
Sbjct: 591 ESIRE-VSENLSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630