Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  158 bits (400), Expect = 5e-43
 Identities = 117/387 (30%), Positives = 203/387 (52%), Gaps = 30/387 (7%)

Query: 250 IIDIQQIVQTYKRD--------------IQLIIAGFSGFSCVMLIGLYWVLSKELSGVRQ 295
           I DI+ +V+ Y++               I L++ G + F  V+++  + ++    +    
Sbjct: 178 IDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAF--VIMVAAHRMVVPIKNMADN 235

Query: 296 IREWILALSDGQIKERRPIKFHNELDTIAQS----LENLQFRLLDVVRNSHR--TMNDLS 349
           + +  +A  +G + +R  +K  +E+  + ++    ++ LQ  + DV   + +  T  +  
Sbjct: 236 LND--IAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAI 293

Query: 350 IKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIA 409
             QT +  S   + NN        +QV TA T++S T+ +V Q         + A   +A
Sbjct: 294 HDQTKVMSSQLLSHNNET------DQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVA 347

Query: 410 ESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAI 469
            +   +D+S ++   +   I+ +   I  L E S  I+SV  VI  I++QTNLLALNAAI
Sbjct: 348 NAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAI 407

Query: 470 EAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRNVSLIHE 529
           EAARAGEQGRGFAVVADEVRSLA +TQ ST++I  ++  L +    A + M  +      
Sbjct: 408 EAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVR 467

Query: 530 TQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQENLSA 589
           +  ++RA+  S   ++  V  I+++++ ++TAA EQ  VTE++ + +  I+ +V E L +
Sbjct: 468 SVESSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHS 527

Query: 590 MERTKQANQNISDLTTNLNDALSFFKI 616
            E   + +Q +S   TNL + +  FKI
Sbjct: 528 SEHAARVSQTVSQEGTNLGNLVGQFKI 554